LnCeCell2 | Statistic data table

Dataset	Disease	Organ	Patients	Cells	Treatment	Pri/Meta	Specie	Platform	Cell type	Gene count	Protein coding count	lncRNA count	Pseudotime count
Cancer AAA_GSE166676 Abdominal aortic aneurysm	Abdominal aortic aneurysm (AAA)	Aortic	5	7734 cells	None	Normal	Human	Illumina NovaSeq 6000	all cell	22961	15587	1063	102
Cancer ACC_GSE113660 Adrenocortical Carcinoma	Adrenocortical Carcinoma (ACC)	Cell Line: Rh41	-	6875 cells	None	-	Cell line	10x Genomics	malignant cell	9203	8599	603	1
Cancer AD_GSE198323 Alzheimers disease	Alzheimers disease (AD)	Hippocampus	6	2470 cells	None	Normal	Human	NextSeq 550	all cell	29975	15730	772	756
Cancer AEL_GSE142213 Acute Erythroid Leukemia	Acute Erythroid Leukemia (AEL)	Bone marrow	2	3994 cells	None	Primary	Human	10x Genomics	all cell	13813	11946	1450	83
Cancer AML_GSE147989 Acute Myeloid Leukemia	Acute Myeloid Leukemia (AML)	Bone marrow	2	7389 cells	Targeted therapy	Primary	Human	10x Genomics	all cell	16190	12641	728	38
Cancer AML_GSE205490 Acute myeloid leukemia	Acute myeloid leukemia (AML)	Bone marrow	2	2643 cells	None	Normal	Human	10x Genomics	mononuclear cells	19507	14650	3870	99
Cancer AS_GSE131778 Atherosclerosis	Atherosclerosis (AS)	Heart	8	11756 cells	None	Normal	Human	10x Genomics	all cell	20427	15191	1071	62
Cancer BC_GSE146137 Bladder cancer	Bladder cancer (BC)	Bladder	8	3828 cells	None	Normal	Human & Mouse	Illumina NextSeq 500	CD45 cell	22518	15458	1021	87
ST Bladder_GSE171351 high-grade muscle invasive bladder canc...	high-grade muscle invasive bladder cancer (NA)	bladder	4	4086 cells	-	Primary	Human	Illumina NovaSeq 6000	-	30487	19149	10489	259
Cancer BLCA_GSE130001 Bladder Urothelial Carcinoma	Bladder Urothelial Carcinoma (BLCA)	Bladder	2	4129 cells	None	Primary	Human	10x Genomics	all cell	16314	13142	490	47
ST Bone_GSE174313 normal cranial suture	normal cranial suture (NA)	bone	4	1670 cells	-	Normal	Mouse	Illumina HiSeq 2000	-	15637	15531	2	8
Cancer BP_GSE167118_BALF_moderate Bacterial pneumonia	Bacterial pneumonia (BP)	Bronchoalveolar lavage fluid of Moderate Bacterial pneumonia	3	5560 cells	None	Moderate	Human	10x Genomics	all cell	10500	9899	454	18
Cancer BP_GSE167118_BALF_no Bacterial pneumonia	Bacterial pneumonia (BP)	Bronchoalveolar lavage fluid of Bacterial pneumonia	1	3349 cells	None	No	Human	10x Genomics	all cell	10475	9907	436	16
Cancer BP_GSE167118_blood_no Bacterial pneumonia	Bacterial pneumonia (BP)	Peripheral blood of Bacterial pneumonia	1	6988 cells	None	No	Human	10x Genomics	all cell	10765	10048	580	20
ST Brain_GSE147747 normal adult mouse brain	normal adult mouse brain (NA)	brain	3	34103 cells	-	Normal	Mouse	Illumina NextSeq 500	-	15234	15135	2	7
ST Brain_GSE158450 brain development	brain development (NA)	brain	1	3024 cells	-	Normal	Mouse	Illumina NovaSeq 6000	-	15637	15531	2	8
ST Brain_GSE165098 neuroinflammatory	neuroinflammatory (NA)	brain	6	15658 cells	-	Normal	Mouse	Illumina NovaSeq 6000	-	15648	15542	2	8
ST Brain_GSE182127 heme-exposed brain	heme-exposed brain (NA)	brain	7	19066 cells	-	Normal	Mouse	Illumina NovaSeq 6000	-	15658	15551	2	8
ST Brain_GSE185715 normal mouse brain	normal mouse brain (NA)	brain	3	18359 cells	-	Normal	Mouse	NextSeq 2000	-	15637	15531	2	8
ST Brain_PMID33420318 brain tumor	brain tumor (NA)	brain	2	3631 cells	-	Primary	Human	10x Visium	-	15740	14276	697	677
ST Brain_PMID35177622 glioblastoma	glioblastoma (NA)	brain	3	2251 cells	-	Primary	Human	Spatial transcriptomicsÂ	-	20824	15105	5356	125
ST Brain_PMID35642896 normal mouse brain	normal mouse brain (NA)	brain	1	2695 cells	-	Normal	Mouse	10x Visium	-	15650	15545	2	8
ST Brain_PMID36778332 normal mouse brain	normal mouse brain (NA)	brain	1	3355 cells	-	Normal	Mouse	10x Visium	-	15650	15545	2	8
Cancer BRCA_GSE110686 Breast Invasive Carcinoma	Breast Invasive Carcinoma (BRCA)	Breast	2	6035 cells	None	Primary, Metastatic	Human	10x Genomics	all cell	12750	10942	392	19
Cancer BRCA_GSE138536 Breast Invasive Carcinoma	Breast Invasive Carcinoma (BRCA)	Breast	8	1902 cells	None	Primary	Human	Smart-seq2	all cell	25457	14504	1535	1916
Cancer BRCA_GSE143423 Breast Invasive Carcinoma	Breast Invasive Carcinoma (BRCA)	Breast	1	4375 cells	None	Metastatic	Human	10x Genomics	all cell	14452	13715	23	13
Cancer BRCA_GSE144320 Breast cancer	Breast cancer (BRCA)	Breast;Embryonic kidney	1	4614 cells	None	Normal	Human	10X Genomics	MCF7 (MCF7 wild type and MCF7 with ESR1 Y537S mutation), T47D wild type, T47D with CDH1 knock out (CRISPR), MDA-MB-134-VI, SUM44-PE, BCK4, MCF10A, and HEK293	21888	15932	5002	103
Cancer BRCA_GSE158399_lymph_node Breast cancer	Breast cancer (BRCA)	Lymph	1	10879 cells	None	Normal	Human	HiSeq X Ten	all cell	25569	14954	4744	3526
Cancer BRCA_GSE158399_primary Breast cancer	Breast cancer (BRCA)	Breast	1	10473 cells	None	Pri	Human	HiSeq X Ten	all cell	28793	16219	6301	3807
Cancer BRCA_GSE181812 Breast cancer	Breast cancer (BRCA)	Breast	3	6688 cells	None	Normal	Human	10X Genomics;InDrop	all cell	32285	16455	4996	3974
Cancer BRCA_GSE75688 Breast Invasive Carcinoma	Breast Invasive Carcinoma (BRCA)	Breast	11	317 cells	None	Primary	Human	Illumina HiSeq 2500	malignant cell	20939	14175	6219	18
Cancer BRCA_GSE77308 Breast Invasive Carcinoma	Breast Invasive Carcinoma (BRCA)	Breast	-	369 cells	None	-	Cell line	Smart-seq	malignant cell	20489	14182	5815	17
Cancer BRCA_SRP114962 Breast Invasive Carcinoma	Breast Invasive Carcinoma (BRCA)	Breast	8	2472 cells	Chemotherapy	Primary	Human	SNRS	all cell	12472	10061	1903	85
ST Breast_GSE203612 breast cancer	breast cancer (NA)	breast	3	6593 cells	-	Primary	Human	Illumina NextSeq 500	-	32381	19397	11684	461
ST Breast_PMID33420318 breast cancer	breast cancer (NA)	breast	2	3035 cells	-	Primary	Human	10x Visium	-	15029	13378	473	1098
ST Breast_PMID34493872 breast cancer	breast cancer (NA)	breast	6	15611 cells	-	Primary	Human	10x Visium	-	18534	15480	2872	32
ST Breast_PMID34650042 breast cancer	breast cancer (NA)	breast	8	13620 cells	-	Primary	Human	Spatial Transcriptomics v1.0	-	17699	17479	64	44
ST Breast_PMID34845373 breast cancer	breast cancer (NA)	breast	1	1031 cells	-	Primary	Human	10x Visium	-	12676	12650	10	15
Cancer CAHD_GSE121893 Coronary atherosclerotic heart disease ...	Coronary atherosclerotic heart disease and dilated cardiomyopathy (CAHD)	Heart	8	4933 cells	None	Normal	Human	Illumina NextSeq 500	all cell	24936	15096	1023	2984
Cancer CESC_ERP020478 Cervical Squamous Cell Carcinoma	Cervical Squamous Cell Carcinoma (CESC)	Cell Line: Hela	-	126 cells	None	-	Cell line	Illumina HiSeq 4000	malignant cell	27547	16791	9968	26
Cancer CHOL_GSE125449_aPD1aPDL1aCTLA4 Cholangiocarcinoma	Cholangiocarcinoma (CHOL)	Liver	10	5762 cells	Immunotherapy	Primary	Human	10x Genomics	all cell	17530	14306	738	39
Cancer CML_GSE76312 Chronic myeafterlogenous leukemia	Chronic myeafterlogenous leukemia (CML)	Bone marrow	1	1877 cells	None	-	Human	Smart-seq2	malignant cell	10252	5506	4321	8
Cancer CML_GSE98734 Chronic myeafterlogenous leukemia	Chronic myeafterlogenous leukemia (CML)	Cell Line: K562	-	267 cells	None	-	Cell line	Illumina HiSeq 2500	malignant cell	20434	13612	6268	18
ST Colon_GSE158328 human intestinal development	human intestinal development (NA)	colon	5	9330 cells	-	Normal	Human	Illumina NextSeq 500	-	32381	19397	11684	461
ST Colon_GSE169749 dextran sodium sulfate induced injury	dextran sodium sulfate induced injury (NA)	colon	2	6234 cells	-	Primary	Mouse	Illumina NovaSeq 6000	-	15637	15531	2	8
ST Colon_GSE190595 dextran sodium sulfate induced injury	dextran sodium sulfate induced injury (NA)	colon	2	7481 cells	-	Normal	Mouse	Illumina NovaSeq 6000	-	15637	15531	2	8
Cancer COVID19_GSE167118_BALF_moderate COVID-19	COVID-19 (COVID-19)	Bronchoalveolar lavage fluid of Moderate COVID19 Patient	2	3016 cells	None	Moderate	Human	10x Genomics	all cell	11058	10381	555	19
Cancer COVID19_GSE167118_blood_moderate COVID-19	COVID-19 (COVID-19)	Peripheral blood of Moderate COVID19 Patient	1	7270 cells	None	Moderate	Human	10x Genomics	all cell	10263	9623	513	18
Cancer COVID19_GSE168212 COVID-19	COVID-19 (COVID-19)	Peripheral blood	1	4935 cells	None	-	Human	10x Genomics	all cell	9041	8560	436	16
Cancer COVID19_GSE169503 COVID-19	COVID-19 (COVID-19)	Peripheral blood	4	4196 cells	None	-	Human	10x Genomics	all cell	9927	9431	396	20
Cancer CRC_GSE112865_mouse_aPD1 Colorectal Cancer	Colorectal Cancer (CRC)	Cell line: MC38	-	4454 cells	Immunotherapy	Primary	Mouse	10x Genomics	all cell	11200	9603	18	8
Cancer CRC_GSE120909_mouse_aPD1 Colorectal Cancer	Colorectal Cancer (CRC)	Colorectal	-	1881 cells	Immunotherapy	Primary	Mouse	Smart-seq	all cell	12245	9775	36	7
Cancer CRC_GSE122969_mouse_aPD1aTIM3 Colorectal Cancer	Colorectal Cancer (CRC)	Colorectal	-	5457 cells	Immunotherapy	Primary	Mouse	10x Genomics	all cell	11959	9897	16	8
Cancer CRC_GSE81861 Colorectal Cancer	Colorectal Cancer (CRC)	Colorectal	11	290 cells	None	Primary	Human	Illumina HiSeq 2000	malignant cell	10276	9129	1143	6
Cancer DLB_GSE141578 Dementia with Lewy Bodies	Dementia with Lewy Bodies (DLB)	Brain	4	1981 cells	None	Normal	Human	10x Genomics	immune cells	17381	13625	2891	83
ST Embryo_GSE160137 mouse embryos development	mouse embryos development (NA)	embryos	4	790 cells	-	Normal	Mouse	Illumina NovaSeq 6000	-	15680	15570	2	8
ST Endometrium_GSE203612 endometrial carcinoma	endometrial carcinoma (NA)	endometrium	1	1351 cells	-	Primary	Human	Illumina NextSeq 500	-	32381	19397	11684	461
Cancer ESCA_GSE81812 Esophageal Carcinoma	Esophageal Carcinoma (ESCA)	Cell Line: KYSE-180	-	314 cells	None	-	Cell line	Smart-seq	malignant cell	21666	14556	6556	18
ST Gastric_GSE186290 gastric cancer	gastric cancer (NA)	gastric	1	2429 cells	-	Primary	Mouse	Illumina HiSeq 2500	-	15637	15531	2	8
ST Gastric_GSE203612 gastric stromal tumor	gastric stromal tumor (NA)	gastric	2	5117 cells	-	Primary	Human	Illumina NextSeq 500	-	32381	19397	11684	461
Cancer GBM_GSE131928_Smartseq2 Glioblastoma Multiforme	Glioblastoma Multiforme (GBM)	Brain	28	7930 cells	None	Primary	Human	Smart-seq2	all cell	18989	17097	755	560
Cancer GBM_GSE57872_CellLine Glioblastoma Multiforme	Glioblastoma Multiforme (GBM)	Cell Line: GSC/DGC	-	177 cells	None	-	Cell line	Smart-seq	malignant cell	33668	18682	13944	34
Cancer GBM_GSE57872_tissue Glioblastoma Multiforme	Glioblastoma Multiforme (GBM)	Brain	5	508 cells	None	Primary	Human	Smart-seq	malignant cell	14685	11604	3075	9
Cancer GBM_GSE84465 Glioblastoma Multiforme	Glioblastoma Multiforme (GBM)	Brain	4	3533 cells	None	Primary	Human	Smart-seq2	all cell	16283	15077	309	357
Cancer GC_GSE163558_primary Gastric cancer	Gastric cancer (GC)	Gastric	6	11677 cells	None	Pri	Human	Illumina NovaSeq 6000	all cell	27547	17906	8007	213
Cancer Glioma_GSE129671 Glioma	Glioma (Glioma)	Brain	4	3945 cells	None	Normal	Human	Illumina NextSeq 500;Illumina NovaSeq 6000	all cell	28201	15221	1489	3055
Cancer Glioma_GSE158175 Glioma	Glioma (Glioma)	Brain	2	9224 cells	None	Pri	Human & Mouse	Illumina NovaSeq 6000	all cell	22122	15841	5255	114
Cancer Glioma_GSE163108 Glioma	Glioma (Glioma)	Brain	31	8252 cells	None	Normal	Human	Smart-Seq2;10X Genomics	T cell	22108	17389	780	589
Normal HCL_GSE134355_AdultAdipose1 Normal	Normal (Normal)	Adipose	1	1372 cells	None	Normal	Human	Microwell-seq	all cell	6972	6798	74	86
Normal HCL_GSE134355_AdultAdrenalGland2 Normal	Normal (Normal)	Adrenal Gland	1	8114 cells	None	Normal	Human	Microwell-seq	all cell	6693	6506	89	80
Normal HCL_GSE134355_AdultArtery1 Normal	Normal (Normal)	Artery	1	9652 cells	None	Normal	Human	Microwell-seq	all cell	8276	8037	96	119
Normal HCL_GSE134355_AdultAscendingColon1 Normal	Normal (Normal)	Colon	1	2026 cells	None	Normal	Human	Microwell-seq	all cell	4396	4202	64	50
Normal HCL_GSE134355_AdultBladder1 Normal	Normal (Normal)	Bladder	1	1267 cells	None	Normal	Human	Microwell-seq	all cell	5501	5292	84	109
Normal HCL_GSE134355_AdultBladder2 Normal	Normal (Normal)	Bladder	1	2750 cells	None	Normal	Human	Microwell-seq	all cell	6798	6607	70	107
Normal HCL_GSE134355_AdultBoneMarrow1 Normal	Normal (Normal)	Bone Marrow	1	2261 cells	None	Normal	Human	Microwell-seq	all cell	5115	4937	72	83
Normal HCL_GSE134355_AdultBoneMarrow2 Normal	Normal (Normal)	Bone Marrow	1	6443 cells	None	Normal	Human	Microwell-seq	all cell	7295	7062	97	113
Normal HCL_GSE134355_AdultCerebellum1 Normal	Normal (Normal)	Cerebellum	1	7324 cells	None	Normal	Human	Microwell-seq	all cell	8995	8717	157	102
Normal HCL_GSE134355_AdultCervix1 Normal	Normal (Normal)	Cervix	1	8096 cells	None	Normal	Human	Microwell-seq	all cell	6871	6652	73	127
Normal HCL_GSE134355_AdultDuodenum1 Normal	Normal (Normal)	Duodenum	1	4681 cells	None	Normal	Human	Microwell-seq	all cell	5200	5018	62	51
Normal HCL_GSE134355_AdultEpityphlon1 Normal	Normal (Normal)	Epityphlon	1	4486 cells	None	Normal	Human	Microwell-seq	all cell	5030	4806	70	79
Normal HCL_GSE134355_AdultEsophagus1 Normal	Normal (Normal)	Esophagus	1	2696 cells	None	Normal	Human	Microwell-seq	all cell	4872	4691	71	102
Normal HCL_GSE134355_AdultEsophagus2 Normal	Normal (Normal)	Esophagus	1	8668 cells	None	Normal	Human	Microwell-seq	all cell	8382	8162	98	104
Normal HCL_GSE134355_AdultFallopiantube1 Normal	Normal (Normal)	Fallopiantube	1	6556 cells	None	Normal	Human	Microwell-seq	all cell	6548	6282	109	132
Normal HCL_GSE134355_AdultGallbladder1 Normal	Normal (Normal)	Gallbladder	1	9769 cells	None	Normal	Human	Microwell-seq	all cell	6986	6738	120	115
Normal HCL_GSE134355_AdultGallbladder2 Normal	Normal (Normal)	Gallbladder	1	5031 cells	None	Normal	Human	Microwell-seq	all cell	6129	5949	75	84
Normal HCL_GSE134355_AdultHeart1 Normal	Normal (Normal)	Heart	1	1308 cells	None	Normal	Human	Microwell-seq	all cell	6489	6295	75	98
Normal HCL_GSE134355_AdultHeart2 Normal	Normal (Normal)	Heart	1	1478 cells	None	Normal	Human	Microwell-seq	all cell	7194	6996	87	97
Normal HCL_GSE134355_AdultIleum2 Normal	Normal (Normal)	Jejunum	1	3367 cells	None	Normal	Human	Microwell-seq	all cell	6710	6454	85	131
Normal HCL_GSE134355_AdultJejunum2 Normal	Normal (Normal)	Kidney	1	5549 cells	None	Normal	Human	Microwell-seq	all cell	7128	6929	73	91
Normal HCL_GSE134355_AdultKidney2 Normal	Normal (Normal)	Kidney	1	9153 cells	None	Normal	Human	Microwell-seq	all cell	7908	7591	144	161
Normal HCL_GSE134355_AdultKidney3 Normal	Normal (Normal)	Kidney	1	9966 cells	None	Normal	Human	Microwell-seq	all cell	9595	9259	159	158
Normal HCL_GSE134355_AdultKidney4 Normal	Normal (Normal)	Kidney	1	3849 cells	None	Normal	Human	Microwell-seq	all cell	8208	7966	125	100
Normal HCL_GSE134355_AdultLiver1 Normal	Normal (Normal)	Liver	1	1811 cells	None	Normal	Human	Microwell-seq	all cell	5576	5399	58	84
Normal HCL_GSE134355_AdultLiver2 Normal	Normal (Normal)	Liver	1	4377 cells	None	Normal	Human	Microwell-seq	all cell	6030	5783	70	142
Normal HCL_GSE134355_AdultLiver4 Normal	Normal (Normal)	Liver	1	4384 cells	None	Normal	Human	Microwell-seq	all cell	5613	5370	72	137
Normal HCL_GSE134355_AdultLung1 Normal	Normal (Normal)	Lung	1	8426 cells	None	Normal	Human	Microwell-seq	all cell	8195	8021	83	66
Normal HCL_GSE134355_AdultLung2 Normal	Normal (Normal)	Lung	1	6022 cells	None	Normal	Human	Microwell-seq	all cell	7850	7695	75	62
Normal HCL_GSE134355_AdultLung3 Normal	Normal (Normal)	Lung	1	9603 cells	None	Normal	Human	Microwell-seq	all cell	8343	8112	85	122
Normal HCL_GSE134355_AdultMuscle1 Normal	Normal (Normal)	Muscle	1	7775 cells	None	Normal	Human	Microwell-seq	all cell	7240	7075	64	81
Normal HCL_GSE134355_AdultOmentum1 Normal	Normal (Normal)	Omentum	1	1487 cells	None	Normal	Human	Microwell-seq	all cell	6308	6105	83	109
Normal HCL_GSE134355_AdultOmentum2 Normal	Normal (Normal)	Omentum	1	9971 cells	None	Normal	Human	Microwell-seq	all cell	7071	6822	112	121
Normal HCL_GSE134355_AdultOmentum3 Normal	Normal (Normal)	Omentum	1	1354 cells	None	Normal	Human	Microwell-seq	all cell	5181	5012	65	84
Normal HCL_GSE134355_AdultPancreas1 Normal	Normal (Normal)	Pancreas	1	9727 cells	None	Normal	Human	Microwell-seq	all cell	4817	4719	44	52
Normal HCL_GSE134355_AdultPeripheralBlood1 Normal	Normal (Normal)	Peripheral Blood	1	2719 cells	None	Normal	Human	Microwell-seq	all cell	6471	6216	106	131
Normal HCL_GSE134355_AdultPeripheralBlood2 Normal	Normal (Normal)	Peripheral Blood	1	5296 cells	None	Normal	Human	Microwell-seq	all cell	4853	4582	69	174
Normal HCL_GSE134355_AdultPeripheralBlood3 Normal	Normal (Normal)	Peripheral Blood	1	2156 cells	None	Normal	Human	Microwell-seq	all cell	5574	5368	67	121
Normal HCL_GSE134355_AdultPeripheralBlood4 Normal	Normal (Normal)	Peripheral Blood	1	7160 cells	None	Normal	Human	Microwell-seq	all cell	5464	5259	71	115
Normal HCL_GSE134355_AdultProstate1 Normal	Normal (Normal)	Prostate	1	2445 cells	None	Normal	Human	Microwell-seq	all cell	6106	5884	118	94
Normal HCL_GSE134355_AdultRectum1 Normal	Normal (Normal)	Rectum	1	5718 cells	None	Normal	Human	Microwell-seq	all cell	5702	5548	71	55
Normal HCL_GSE134355_AdultSigmoidColon1 Normal	Normal (Normal)	Colon	1	3281 cells	None	Normal	Human	Microwell-seq	all cell	5683	5541	65	45
Normal HCL_GSE134355_AdultStomach1 Normal	Normal (Normal)	Stomach	1	1879 cells	None	Normal	Human	Microwell-seq	all cell	7240	6997	83	126
Normal HCL_GSE134355_AdultStomach2 Normal	Normal (Normal)	Stomach	1	4669 cells	None	Normal	Human	Microwell-seq	all cell	5097	4868	66	147
Normal HCL_GSE134355_AdultStomach3 Normal	Normal (Normal)	Stomach	1	8076 cells	None	Normal	Human	Microwell-seq	all cell	7306	7112	91	86
Normal HCL_GSE134355_AdultTemporalLobe1 Normal	Normal (Normal)	Lobe	1	9544 cells	None	Normal	Human	Microwell-seq	all cell	8233	8005	127	85
Normal HCL_GSE134355_AdultThyroid1 Normal	Normal (Normal)	Thyroid	1	6319 cells	None	Normal	Human	Microwell-seq	all cell	7981	7623	151	190
Normal HCL_GSE134355_AdultThyroid2 Normal	Normal (Normal)	Thyroid	1	6328 cells	None	Normal	Human	Microwell-seq	all cell	7275	6985	102	147
Normal HCL_GSE134355_AdultTrachea2 Normal	Normal (Normal)	Trachea	1	9949 cells	None	Normal	Human	Microwell-seq	all cell	8785	8560	97	112
Normal HCL_GSE134355_AdultTransverseColon1 Normal	Normal (Normal)	Colon	1	5765 cells	None	Normal	Human	Microwell-seq	all cell	7389	7117	82	139
Normal HCL_GSE134355_AdultUreter1 Normal	Normal (Normal)	Ureter	1	2390 cells	None	Normal	Human	Microwell-seq	all cell	4366	4162	65	130
Normal HCL_GSE134355_AdultUterus1 Normal	Normal (Normal)	Ureter	1	7694 cells	None	Normal	Human	Microwell-seq	all cell	6408	6235	65	101
Normal HCL_GSE134355_ChorionicVillus1 Normal	Normal (Normal)	Chorionic Villus	1	9898 cells	None	Normal	Human	Microwell-seq	all cell	7982	7793	73	111
Normal HCL_GSE134355_CordBlood1 Normal	Normal (Normal)	Cord Blood	1	2150 cells	None	Normal	Human	Microwell-seq	all cell	4951	4772	68	76
Normal HCL_GSE134355_CordBlood2 Normal	Normal (Normal)	Cord Blood	1	4444 cells	None	Normal	Human	Microwell-seq	all cell	4997	4806	65	108
Normal HCL_GSE134355_CordBloodCD34P1 Normal	Normal (Normal)	Cord Blood CD34	1	5607 cells	None	Normal	Human	Microwell-seq	all cell	4231	4012	90	105
Normal HCL_GSE134355_FetalAdrenalGland2 Normal	Normal (Normal)	Adrenal Gland	1	9875 cells	None	Normal	Human	Microwell-seq	all cell	9511	9199	126	183
Normal HCL_GSE134355_FetalAdrenalGland3 Normal	Normal (Normal)	Adrenal Gland	1	2547 cells	None	Normal	Human	Microwell-seq	all cell	5841	5672	80	84
Normal HCL_GSE134355_FetalAdrenalGland4 Normal	Normal (Normal)	Adrenal Gland	1	1994 cells	None	Normal	Human	Microwell-seq	all cell	6286	6069	94	115
Normal HCL_GSE134355_FetalBrain3 Normal	Normal (Normal)	Brain	1	2904 cells	None	Normal	Human	Microwell-seq	all cell	6488	6246	98	141
Normal HCL_GSE134355_FetalBrain4 Normal	Normal (Normal)	Brain	1	3920 cells	None	Normal	Human	Microwell-seq	all cell	6300	6082	115	104
Normal HCL_GSE134355_FetalBrain5 Normal	Normal (Normal)	Brain	1	5096 cells	None	Normal	Human	Microwell-seq	all cell	6962	6695	110	154
Normal HCL_GSE134355_FetalBrain6 Normal	Normal (Normal)	Brain	1	1705 cells	None	Normal	Human	Microwell-seq	all cell	6587	6346	100	139
Normal HCL_GSE134355_FetalCalvaria1 Normal	Normal (Normal)	Calvaria	1	5129 cells	None	Normal	Human	Microwell-seq	all cell	5481	5264	84	129
Normal HCL_GSE134355_FetalEyes1 Normal	Normal (Normal)	Eye	1	1880 cells	None	Normal	Human	Microwell-seq	all cell	6056	5843	91	117
Normal HCL_GSE134355_FetalFemaleGonad1 Normal	Normal (Normal)	Female Gonad	1	2710 cells	None	Normal	Human	Microwell-seq	all cell	7189	6970	112	96
Normal HCL_GSE134355_FetalFemaleGonad2 Normal	Normal (Normal)	Female Gonad	1	4231 cells	None	Normal	Human	Microwell-seq	all cell	7751	7529	104	115
Normal HCL_GSE134355_FetalHeart1 Normal	Normal (Normal)	Heart	1	5319 cells	None	Normal	Human	Microwell-seq	all cell	6788	6613	85	86
Normal HCL_GSE134355_FetalHeart2 Normal	Normal (Normal)	Heart	1	2678 cells	None	Normal	Human	Microwell-seq	all cell	7959	7690	97	164
Normal HCL_GSE134355_FetalIntestine1 Normal	Normal (Normal)	Intestine	1	1448 cells	None	Normal	Human	Microwell-seq	all cell	7964	7614	115	227
Normal HCL_GSE134355_FetalIntestine2 Normal	Normal (Normal)	Intestine	1	1338 cells	None	Normal	Human	Microwell-seq	all cell	6180	5857	81	237
Normal HCL_GSE134355_FetalIntestine3 Normal	Normal (Normal)	Intestine	1	9740 cells	None	Normal	Human	Microwell-seq	all cell	7118	6895	96	121
Normal HCL_GSE134355_FetalIntestine4 Normal	Normal (Normal)	Intestine	1	6931 cells	None	Normal	Human	Microwell-seq	all cell	6089	5898	81	103
Normal HCL_GSE134355_FetalIntestine5 Normal	Normal (Normal)	Intestine	1	4059 cells	None	Normal	Human	Microwell-seq	all cell	6897	6680	96	113
Normal HCL_GSE134355_FetalKidney3 Normal	Normal (Normal)	Kidney	1	4939 cells	None	Normal	Human	Microwell-seq	all cell	7590	7343	114	129
Normal HCL_GSE134355_FetalKidney4 Normal	Normal (Normal)	Kidney	1	4734 cells	None	Normal	Human	Microwell-seq	all cell	6925	6694	109	120
Normal HCL_GSE134355_FetalKidney5 Normal	Normal (Normal)	Kidney	1	9932 cells	None	Normal	Human	Microwell-seq	all cell	7588	7356	129	101
Normal HCL_GSE134355_FetalKidney6 Normal	Normal (Normal)	Kidney	1	3057 cells	None	Normal	Human	Microwell-seq	all cell	6450	6236	94	116
Normal HCL_GSE134355_FetalLung1 Normal	Normal (Normal)	Lung	1	4526 cells	None	Normal	Human	Microwell-seq	all cell	8002	7585	119	279
Normal HCL_GSE134355_FetalLung2 Normal	Normal (Normal)	Lung	1	5121 cells	None	Normal	Human	Microwell-seq	all cell	7021	6797	100	118
Normal HCL_GSE134355_FetalMaleGonad1 Normal	Normal (Normal)	Male Gonad	1	3358 cells	None	Normal	Human	Microwell-seq	all cell	10162	9888	149	121
Normal HCL_GSE134355_FetalMaleGonad2 Normal	Normal (Normal)	Male Gonad	1	9853 cells	None	Normal	Human	Microwell-seq	all cell	9025	8764	144	116
Normal HCL_GSE134355_FetalPancreas1 Normal	Normal (Normal)	Pancreas	1	8977 cells	None	Normal	Human	Microwell-seq	all cell	5593	5388	96	91
Normal HCL_GSE134355_FetalPancreas2 Normal	Normal (Normal)	Pancreas	1	6939 cells	None	Normal	Human	Microwell-seq	all cell	9319	9060	118	137
Normal HCL_GSE134355_FetalPancreas3 Normal	Normal (Normal)	Pancreas	1	2830 cells	None	Normal	Human	Microwell-seq	all cell	7037	6820	90	120
Normal HCL_GSE134355_FetalRib2 Normal	Normal (Normal)	Rib	1	1432 cells	None	Normal	Human	Microwell-seq	all cell	5151	4839	74	232
Normal HCL_GSE134355_FetalRib3 Normal	Normal (Normal)	Rib	1	4560 cells	None	Normal	Human	Microwell-seq	all cell	5348	5100	78	159
Normal HCL_GSE134355_FetalSkin2 Normal	Normal (Normal)	Skin	1	5294 cells	None	Normal	Human	Microwell-seq	all cell	6756	6553	84	112
Normal HCL_GSE134355_FetalSkin3 Normal	Normal (Normal)	Skin	1	1697 cells	None	Normal	Human	Microwell-seq	all cell	5848	5614	86	145
Normal HCL_GSE134355_FetalSpinalCord1 Normal	Normal (Normal)	Spinal Cord	1	5916 cells	None	Normal	Human	Microwell-seq	all cell	5463	5280	75	100
Normal HCL_GSE134355_FetalStomach1 Normal	Normal (Normal)	Stomach	1	1322 cells	None	Normal	Human	Microwell-seq	all cell	6035	5792	87	147
Normal HCL_GSE134355_FetalStomach2 Normal	Normal (Normal)	Stomach	1	6631 cells	None	Normal	Human	Microwell-seq	all cell	6830	6596	95	127
Normal HCL_GSE134355_FetalThymus1 Normal	Normal (Normal)	Thymus	1	2448 cells	None	Normal	Human	Microwell-seq	all cell	4827	4523	105	185
Normal HCL_GSE134355_FetalThymus2 Normal	Normal (Normal)	Thymus	1	2068 cells	None	Normal	Human	Microwell-seq	all cell	4467	4170	112	171
Normal HCL_GSE134355_hESC1 Normal	Normal (Normal)	Early embryo/Primitive gonad	1	1660 cells	None	Normal	Human	Microwell-seq	all cell	6386	6118	96	168
Normal HCL_GSE134355_NeonatalAdrenalGland1 Normal	Normal (Normal)	Adrenal Gland	1	5863 cells	None	Normal	Human	Microwell-seq	all cell	7563	7331	111	111
Normal HCL_GSE134355_Placenta1 Normal	Normal (Normal)	Placenta	1	9595 cells	None	Normal	Human	Microwell-seq	all cell	7758	7549	99	100
ST Heart_PMID31835037 developing heart in early pregnancy	developing heart in early pregnancy (NA)	heart	4	3111 cells	-	Normal	Human	10x Visium	-	24050	17486	2046	2713
ST Hippocampus_PMID33083725 Alzheimers disease	Alzheimers disease (NA)	hippocampus	12	15062 cells	-	Primary	Mouse	10x Visium	-	12273	12192	2	4
Cancer HIV_GSE202410 People with HIV on antiretroviral thera...	People with HIV on antiretroviral therapy (HIV)	Blood;CSF	11	10790 cells	None	Normal	Human	Illumina HiSeq 4000	all cell	20308	15284	4049	99
Cancer HLHS_GSE138979 Hypoplastic left heart syndrome	Hypoplastic left heart syndrome (HLHS)	Heart	6	870 cells	None	Normal	Human	10X Genomics	endocardial cell	19782	14480	1069	54
Cancer HNSC_GSE103322 Head and Neck Squamous Cell Carcinoma	Head and Neck Squamous Cell Carcinoma (HNSC)	Head and neck	18	5902 cells	None	Primary	Human	Smart-seq2	all cell	18241	16577	677	518
Cancer HPB_GSE163678 Human pleuropulmonary blastoma	Human pleuropulmonary blastoma (HPB)	Lung	1	10389 cells	None	Normal	Human	10X Genomics	all cell	25636	17280	7081	155
ST Ileum_PMID34845373 Colorectal Cancer	Colorectal Cancer (NA)	ileum	1	13119 cells	-	Primary	Human	10x Visium	-	32381	19397	11684	461
ST Intestine_PMID36776149 ovarian carcinosarcoma (Metastasis to o...	ovarian carcinosarcoma (Metastasis to omentum) (NA)	intestine	1	16194 cells	-	Metastatic	Human	10x Visium	-	32381	19397	11684	461
ST Kidney_GSE171406_human acute kidney injury	acute kidney injury (NA)	kidney	1	3007 cells	-	Primary	Human	Illumina NovaSeq 6000	-	32381	19397	11684	461
ST Kidney_GSE171406_mouse acute kidney injury	acute kidney injury (NA)	kidney	1	5787 cells	-	Primary	Mouse	Illumina NovaSeq 6000	-	15637	15531	2	8
ST Kidney_GSE182939 acute kidney injury	acute kidney injury (NA)	kidney	2	9539 cells	-	Primary	Mouse	Illumina NovaSeq 6000	-	15650	15545	2	8
ST Kidney_GSE185715 kidney organoid	kidney organoid (NA)	kidney	1	1357 cells	-	-	Human	NextSeq 2000	-	32381	19397	11684	461
Cancer KIRC_GSE171306 Kidney Renal Clear Cell Carcinoma	Kidney Renal Clear Cell Carcinoma (KIRC)	Renal	3	659 cells	None	Normal	Human	10X Genomics	all cell	17031	14099	501	356
Cancer KIRC_GSE73121 Kidney Renal Clear Cell Carcinoma	Kidney Renal Clear Cell Carcinoma (KIRC)	Kidney/PDX	-	118 cells	None	Metastatic	Cell line	Illumina HiSeq 2500	all cell	16730	13418	3310	6
Cancer LC_GSE111896 Lung cancer	Lung cancer (LC)	Lung	3	8652 cells	None	Normal	Human	10X Genomics	T cells	19494	13723	825	84
Cancer LGG_GSE102130 Brain Lower Grade Glioma	Brain Lower Grade Glioma (LGG)	Brain	6	4058 cells	None	Primary	Human	Smart-seq2	all cell	18370	16637	716	530
Cancer LGG_GSE141982 Brain Lower Grade Glioma	Brain Lower Grade Glioma (LGG)	Brain	2	5261 cells	None	Primary	Human	10x Genomics	all cell	20260	14564	1249	67
Cancer LGG_GSE70630 Brain Lower Grade Glioma	Brain Lower Grade Glioma (LGG)	Brain	6	4347 cells	None	Primary	Human	Smart-seq2	all cell	17524	15898	665	519
Cancer LGG_GSE89567 Brain Lower Grade Glioma	Brain Lower Grade Glioma (LGG)	Brain	10	6341 cells	None	Primary	Human	Smart-seq2	all cell	18733	16930	741	551
Cancer LIHC_GSE107747 Liver Hepatocellular Carcinoma	Liver Hepatocellular Carcinoma (LIHC)	Peripheral blood	2	9950 cells	None	Primary	Human	10x Genomics	malignant cell	8513	8373	109	18
Cancer LIHC_GSE125449 Liver cancer	Liver cancer (LC)	Liver	19	8551 cells	None	Pri	Human	10X Genomics	all cell	18372	14649	832	44
Cancer LIHC_GSE125449_aPDL1aCTLA4 Liver Hepatocellular Carcinoma	Liver Hepatocellular Carcinoma (LIHC)	Liver	9	3835 cells	Immunotherapy	Primary	Human	10x Genomics	all cell	17356	14159	744	45
Cancer LIHC_GSE140228_Smartseq2 Liver Hepatocellular Carcinoma	Liver Hepatocellular Carcinoma (LIHC)	Liver	6	7074 cells	None	Primary	Human	Smart-seq2	all cell	33080	16266	1763	3102
Cancer LIHC_GSE146115 Liver cancer	Liver cancer (LC)	Liver	4	2970 cells	None	Normal	Human	HiSeq X Ten	all cell	21753	16557	1608	609
Cancer LIHC_GSE173671 Liver cancer	Liver cancer (LC)	Liver	2	659 cells	Drug therapy	Normal	Human	Illumina NovaSeq 6000	immune cells	17031	14099	501	356
Cancer LIHC_GSE98638 Liver Hepatocellular Carcinoma	Liver Hepatocellular Carcinoma (LIHC)	Liver	6	5059 cells	None	Primary	Human	Smart-seq2	all cell	17254	15454	662	468
ST Liver_GSE165141 normal liver tissue	normal liver tissue (NA)	liver	8	8641 cells	-	Normal	Mouse	Illumina NextSeq 500	-	8469	8413	0	2
ST Liver_GSE185477 normal human liver caudate lobes	normal human liver caudate lobes (NA)	liver	1	2265 cells	-	Normal	Human	Illumina HiSeq 2500	-	36117	19166	15821	374
ST Liver_GSE192741_human macrophage development	macrophage development (NA)	liver	4	6889 cells	-	Normal	Human	Illumina NovaSeq 6000	-	20546	17978	2190	219
ST Liver_GSE192741_mouse macrophage development	macrophage development (NA)	liver	6	17290 cells	-	Normal	Mouse	Illumina NovaSeq 6000	-	15637	15531	2	8
ST Liver_GSE203612 liver hepatocellular carcinoma	liver hepatocellular carcinoma (NA)	liver	1	1661 cells	-	Primary	Human	Illumina NextSeq 500	-	32381	19397	11684	461
Cancer LUAD_DRP001358 Lung Adenocarcinoma	Lung Adenocarcinoma (LUAD)	Cell Line: LC-2/ad	-	245 cells	None	-	Cell line	Illumina HiSeq 2500	malignant cell	21135	14179	6391	16
Cancer LUAD_DRP003337 Lung Adenocarcinoma	Lung Adenocarcinoma (LUAD)	Cell Line: A549	-	218 cells	None	-	Cell line	Illumina HiSeq 2500	malignant cell	15100	11503	3260	13
Cancer LUAD_GSE69405 Lung Adenocarcinoma	Lung Adenocarcinoma (LUAD)	PDX	-	126 cells	drug treated	-	Cell line	Illumina HiSeq 2500	malignant cell	21116	14459	6113	18
ST Lung_GSE178361 normal human lung	normal human lung (NA)	lung	2	2220 cells	-	Normal	Human	Illumina NovaSeq 6000	-	36117	19166	15821	374
ST Lung_GSE185715 lung organoid	lung organoid (NA)	lung	1	1832 cells	-	-	Human	NextSeq 2000	-	32381	19397	11684	461
ST Lung_GSE193460 lung cancer	lung cancer (NA)	lung	3	7627 cells	-	Primary	Mouse	Illumina NovaSeq 6000	-	15650	15545	2	8
ST Lung_PMID36776149 COVID-19	COVID-19 (NA)	lung	1	1514 cells	-	Primary	Human	10x Visium	-	32381	19397	11684	461
Cancer MB_GSE119926 Medulloblastoma	Medulloblastoma (MB)	BrainPDX	25	7745 cells	None	Primary, Metastatic	Human	Smart-seq2	all cell	19073	17206	765	564
Cancer Melanoma_GSE115978 Melanoma	Melanoma (MEL)	Skin	31	7186 cells	None	Normal	Human	SMART-Seq2	all cell	22936	17771	834	608
Cancer Melanoma_GSE116237 Melanoma	Melanoma (MEL)	Skin	1	674 cells	Targeted therapy	Normal	Human	SMARTseq2	malignant cells	24675	16856	1883	2585
Cancer Melanoma_GSE176029 Melanoma	Melanoma (MEL)	Liver	2	8719 cells	None	Meta	Human	Illumina NovaSeq 6000	all cell	23906	16904	5754	134
Cancer MEL_GSE157743 Melanoma	Melanoma (MEL)	Peripheral blood	22	102 cells	None	Primary	Human	Smart-seq2	all cell	19271	18473	33	19
Cancer MEL_GSE99330 Melanoma	Melanoma (MEL)	Cell Line: WM989	-	575 cells	None	-	Cell line	Drop-seq	malignant cell	13891	10893	2700	11
Cancer MM_GSE110499_10X Acute Myeloid Leukemia	Acute Myeloid Leukemia (AML)	Bone marrow	3	1184 cells	None	Primary	Human	10x Genomics	all cell	10653	10343	311	0
Cancer MM_GSE110499_Smart Acute Myeloid Leukemia	Acute Myeloid Leukemia (AML)	Bone marrow	3	169 cells	None	Primary	Human	Smart-seq	all cell	12792	12116	677	2
ST Muscle_PMID36776149 soft tissue carcinoma	soft tissue carcinoma (NA)	muscle	4	15154 cells	-	Primary	Human	10x Visium	-	32381	19397	11684	461
Cancer NET_GSE140312 Neuroendocrine Tumor	Neuroendocrine Tumor (NET)	Small intestine(primary)/Liver(metastatic)	1	3158 cells	None	Primary, Metastatic	Human	10x Genomics	all cell	14872	13202	1279	35
Cancer NSCLC_DRP003981 Lung Adenocarcinoma	Lung Adenocarcinoma (LUAD)	Cell Line: PC-9	-	164 cells	None	-	Cell line	Illumina HiSeq 2500	malignant cell	18083	13896	3905	15
Cancer NSCLC_GSE127471 Non-small Cell Lung Cancer	Non-small Cell Lung Cancer (NSCLC)	Peripheral blood	1	1108 cells	None	Primary	Human	10x Genomics	all cell	10700	9478	170	22
Cancer OC_GSE147082 Ovarian cancer	Ovarian cancer (OC)	Ovarian	6	9358 cells	None	Normal	Human	Illumina NextSeq 500	all cell	34605	17202	7342	4982
Cancer OC_GSE150864 Ovarian cancer	Ovarian cancer (OC)	Ovarian	2	2775 cells	None	Normal	Human	Illumina NextSeq 500	all cell	17431	15075	1502	55
Cancer OC_GSE158937 Ovarian cancer	Ovarian cancer (OC)	Ovarian	3	8430 cells	None	Normal	Human	10X Genomics	all cell	29375	17852	10675	112
Cancer OC_GSE160753 Ovarian cancer	Ovarian cancer (OC)	Ovarian	1	8000 cells	immunotherapy	Normal	Human	Illumina NovaSeq 6000	all cell	20067	14879	4166	109
Cancer OC_GSE160754 Ovarian cancer	Ovarian cancer (OC)	Ovarian	1	3751 cells	immunotherapy	Normal	Human	Illumina NovaSeq 6000	all cell	21505	16217	4246	100
ST OFB_PMID33083725 Alzheimers disease	Alzheimers disease (NA)	olfactory bulb	12	5059 cells	-	Primary	Mouse	10x Visium	-	14759	14663	2	6
ST OFB_PMID34845373 mouse olfactory bulb	mouse olfactory bulb (NA)	olfactory bulb	1	3116 cells	-	Normal	Mouse	Spatial Transcriptomics v1.0	-	11576	11500	2	3
ST Ovary_GSE203612 ovarian cancer	ovarian cancer (NA)	ovary	2	3423 cells	-	Primary	Human	Illumina NextSeq 500	-	32381	19397	11684	461
Cancer OV_GSE115007 Ovarian Serous Cystadenocarcinoma	Ovarian Serous Cystadenocarcinoma (OV)	Ovary	1	6000 cells	None	Primary	Human	10x Genomics	all cell	14662	12063	550	31
Cancer OV_GSE118828 Ovarian Serous Cystadenocarcinoma	Ovarian Serous Cystadenocarcinoma (OV)	Ovary	9	1909 cells	None	Primary, Metastatic	Human	Smart-seq2	all cell	14177	13432	332	221
Cancer PAAD_GSE112845 Pancreatic adenosquamous carcinoma	Pancreatic adenosquamous carcinoma (PAAD)	Cell Line: KLM1	-	8321 cells	None	-	Cell line	10x Genomics	all cell	12913	12313	600	1
Cancer PAAD_GSE165399 Pancreatic adenosquamous carcinoma	Pancreatic adenosquamous carcinoma (PAAD)	Pancreas	3	9400 cells	None	Normal	Human	HiSeq X Ten	all cell	34376	17111	7787	5564
ST Pancreas_GSE111672 pancreatic Cancer	pancreatic Cancer (NA)	pancreas	6	3285 cells	-	Primary	Human	Illumina NextSeq 500	-	5479	5361	57	23
ST Pancreas_GSE203612 pancreatic ductal adenocarcinoma	pancreatic ductal adenocarcinoma (NA)	pancreas	1	1789 cells	-	Primary	Human	Illumina NextSeq 500	-	32381	19397	11684	461
Cancer PBMC_8K_10X Peripheral Blood Mononuclear Cell	Peripheral Blood Mononuclear Cell (PBMC_8K_10X)	Peripheral blood	1	8488 cells	None	Normal	Human	10x Genomics	all cell	15399	12330	623	38
Cancer PC_GSE153892 Prostate cancer	Prostate cancer (PC)	Prostate	6	11360 cells	None	Normal	Human	Illumina NextSeq 500	macrophages	21803	15773	4928	137
Cancer PC_GSE157703 Prostate cancer	Prostate cancer (PC)	Prostate	2	7210 cells	None	Normal	Human	HiSeq X Ten	all cell	26069	17341	1847	99
Cancer PC_GSE176031 Prostate cancer	Prostate cancer (PC)	Prostate	15	9927 cells	None	Normal	Human	Illumina HiSeq 2000	all cell	32336	17314	1982	319
Cancer PC_GSE207006 Prostate cancer	Prostate cancer (PC)	Peripheral blood	2	3725 cells	None	Normal	Human	Illumina HiSeq 4000	blood cell	21571	15391	5074	123
Cancer PDAC_GSE141017 Pancreatic ductal adenocarcinoma	Pancreatic ductal adenocarcinoma (PDAC)	Pancreas	3	6332 cells	None	Normal	Human & Mouse	10X Genomics	all cell	19882	14798	760	65
Cancer PDAC_GSE156405 Pancreatic ductal adenocarcinoma	Pancreatic ductal adenocarcinoma (PDAC)	Pancreas;Vaginal apex;Liver;Lung;Peripheral blood	19	11158 cells	None	Pri and Meta	Human	Illumina NextSeq 500	all cell	25569	16777	1641	140
Cancer PDAC_GSE158356 Pancreatic ductal adenocarcinoma	Pancreatic ductal adenocarcinoma (PDAC)	Pancreas;Liver	15	8038 cells	None	Pri and Meta	Human & Mouse	10X Genomics	all cell	24541	16214	1221	109
Cancer PD_GSE141578 Parkinsons disease	Parkinsons disease (PD)	Brain	15	8080 cells	None	Normal	Human	10X Genomics	immune cells	20569	15062	4350	128
Cancer PD_GSE163323 Parkinsons disease	Parkinsons disease (PD)	Brain	2	7423 cells	None	Normal	Human	10x Genomics	iPSC-derived microglia cell	21515	14463	983	87
Cancer PRAD_GSE99795 Prostate Adenocarcinoma	Prostate Adenocarcinoma (PRAD)	Cell Line: LNCaP	-	144 cells	None	-	Cell line	Smart-seq2	malignant cell	20104	13929	5679	19
ST Prostate_GSE230282 Prostate cancer	Prostate cancer (NA)	prostate	1	4397 cells	-	Primary	Human	DNBSEQ-G400	-	36117	19166	15821	374
ST Prostate_PMID36778332 Prostate cancer	Prostate cancer (NA)	prostate	1	4371 cells	-	Primary	Human	10x Visium	-	17808	17617	17	6
ST Rheumatoidarthritis_PMID31831833 rheumatoid arthritis	rheumatoid arthritis (NA)	synovial	3	3611 cells	-	Primary	Human	NextSeq 500	-	10241	10235	1	5
Cancer SARC_GSE146221_CHLA10 Sarcoma	Sarcoma (SARC)	Soft Tissue	-	4632 cells	None	-	Cell line	10x Genomics	all cell	11504	9576	1928	1
Cancer SARC_GSE146221_CHLA9 Sarcoma	Sarcoma (SARC)	Soft Tissue	-	4865 cells	None	-	Cell line	10x Genomics	all cell	13965	12214	1751	1
Cancer SARC_GSE146221_TC71 Sarcoma	Sarcoma (SARC)	Soft Tissue	-	3673 cells	None	-	Cell line	10x Genomics	all cell	13357	12066	1291	1
Cancer SCLC_GSE150766 Small cell lung cancer	Small cell lung cancer (SCLC)	Liver	1	1875 cells	Drug therapy	Normal	Human	10X Genomics	all cell	23068	16610	5210	126
Cancer SKCM_GSE115978_aPD1 Skin Cutaneous Melanoma	Skin Cutaneous Melanoma (SKCM)	Skin	31	7186 cells	Immunotherapy	Primary, Metastatic	Human	Smart-seq2	all cell	19530	17622	779	589
Cancer SKCM_GSE72056 Skin Cutaneous Melanoma	Skin Cutaneous Melanoma (SKCM)	Skin	19	4645 cells	None	Metastatic	Human	Smart-seq2	all cell	19126	17333	758	577
Cancer SKCM_GSE81383 Skin Cutaneous Melanoma	Skin Cutaneous Melanoma (SKCM)	Skin	3	307 cells	None	Metastatic	Human	Illumina HiSeq 2500	malignant cell	19137	13237	5386	16
ST Skin_GSE144240 squamous cell carcinoma	squamous cell carcinoma (NA)	skin	4	8671 cells	-	Primary	Human	Illumina NextSeq 500	-	12687	12652	20	14
ST Skin_GSE178758 skin wounds tissue	skin wounds tissue (NA)	skin	1	4428 cells	-	Primary	Mouse	Illumina NextSeq 500	-	15650	15545	2	8
ST Skin_PMID34845373 squamous cell carcinoma	squamous cell carcinoma (NA)	skin	1	10404 cells	-	Primary	Human	10x Visium	-	32381	19397	11684	461
ST Spondyloarthritis_PMID31831833 spondyloarthritis	spondyloarthritis (NA)	synovial	3	2628 cells	-	Primary	Human	NextSeq 500	-	6132	6127	2	3
Cancer T2D_GSE135076 Type 2 diabetes	Type 2 diabetes (T2D)	Embryonic	4	1254 cells	None	Normal	Human	Drop-seq	B cell	30820	16888	6516	4558
Cancer TNBC_GSE118389 Triple negative breast cancer	Triple negative breast cancer (TNBC)	Breast	6	1534 cells	None	Normal	Human	Illumina Genome Analyzer	all cell	19711	17233	897	561
Cancer TNBC_GSE148673 Triple negative breast cancer	Triple negative breast cancer (TNBC)	Brain	5	8944 cells	None	Primary	Human	10x Genomics	all cell	32717	19403	11816	590