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Users can search LncSpA by four different query options, based on preferred normal or cancer tissues of interest, lncRNA names or chromosmal locailization.
Normal tissue
Cancer
lncRNA
Chromosome
Obtaining TE lncRNAs in normal tissue, you can input resource (e.g. ‘Integrated’), tissue (e.g. ‘liver’), classification (e.g. ‘TE’).
Resource:
Integrated
GTEx
HPA
HBM2
FANTOM
Tissue:
adipose.tissue
adrenal.gland
appendix
bladder
blood
blood.vessel
bone.marrow
brain
breast
cervix
colon
duodenum
esophagus
gall.bladder
heart
kidney
liver
lung
lymph.node
muscle
ovary
pancreas
pituitary
placenta
prostate
salivary.gland
skin
small.intestine
spleen
stomach
testis
thyroid
uterus
vagina
Classification:
TE
Obtaining TE lncRNAs in cancer tissue, you can input resource (e.g. ‘Adult (TCGA)’), cancer name (e.g. ‘LIHC’), classification (e.g. ‘TE’).
Resource:
Adult (TCGA)
Pedia (TARGET)
Cancer:
UVM
UCS
UCEC
THYM
THCA
TGCT
STAD
SKCM
SARC
READ
PRAD
PCPG
PAAD
OV
MESO
LUSC
LUAD
LIHC
LGG
LAML
KIRP
KIRC
KICH
HNSC
GBM
ESCA
DLBC
COAD
CHOL
CESC
BRCA
BLCA
ACC
Classification:
TE
TS
TER
TEH
Obtaining the spatial expression pattern of the input lncRNA, you can input Gene Symbol (e.g. 'HULC'), Ensembl ID (e.g. 'ENSG00000251164').
Obtaining TE lncRNAs in one chromosome or interval, you can input resource (e.g. ‘Integration’), chromosome (e.g. ‘chr1’), starting position and end position.
Resource:
Integrated
TCGA
TARGET
GTEx
HPA
HBM2
FANTOM
Chromosome:
chr1
chr2
chr3
chr4
chr5
chr6
chr7
chr8
chr9
chr10
chr11
chr12
chr13
chr14
chr15
chr16
chr17
chr18
chr19
chr20
chr21
chr22
chrX
chrY
Start:
End: