Marker genes of cell types

COSine similarity-based marker Gene identification (COSG) were used to identify the cell type-specifically highly expressed genes comparing with other cells.

Cell Type Marker P Value FDR Value log2FC

The 'GO BP', 'KEGG' and 'Cell cycle' gene sets were obtained from Molecular Signatures Database (MSigDB, https://www.gsea-msigdb.org/gsea/msigdb). The 'Cell state' gene sets were obtained from a previous study (CancerSEA: a cancer single-cell state atlas). The 'Immune pathway' gene sets were obtained from ImmPort database (https://www.immport.org/home).

• GO BP
• KEGG
• Cell cycle
• Cell type correlation

Select a cell type and TF

Ligand Sending Cell Type Ligand Expression Receptor Receiving Cell Type Receptor Expression Function Score