The Genomic Atlas of Breast Cancer — the non-coding theme

Update News

  • GABC update 2020.06.15
  • GABC update 2019.03.20
  • GABC online 2018.08.09
  • Data collection 2018.04.09

About Us

  • Steven Xi Chen:
    steven.chen@miami.edu
  • Yunpeng Zhang:
    YXZ1418@med.miami.edu
  • Peng Wang:
    wpgqy@163.com
  • Shangwei Ning:
    ningsw@ems.hrbmu.edu.cn
  • Xia Li:
    lixia@hrbmu.edu.cn

Breast cancer associated SNPs

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Chr Position SNPID Disease/Trait name pvalue PMID
12 106898357 rs1004601 Breast size (bra cup size in women) 9.95E-05 22747683
12 58208164 rs1021469 Gene expression of FAM119B (probeID ILMN_1723846) in breast tumors 5.06E-04 22522925
12 28106417 rs10431219 Breast size (bra cup size in women) 6.86E-07 22747683
12 28104684 rs10431272 Breast size (bra cup size in women) 9.41E-07 22747683
12 56984606 rs10450 Gene expression of RBMS2 (probeID ILMN_1755411) in breast tumors 7.62E-07 22522925
12 109977464 rs10466917 Gene expression of MMAB (probeID ILMN_1872276) in breast tumors 2.22E-04 22522925
12 28100372 rs10492365 Breast size (bra cup size in women) 7.89E-07 22747683
12 10079527 rs10505741 Gene expression of HS.282397 (probeID ILMN_1900994) in breast tumors 2.19E-18 22522925
12 47296380 rs10506269 Breast cancer 5.05E-04 21424380
12 97879744 rs10507088 Breast cancer risk (in BRCA1 mutation carriers) 1.10E-04 20852631
12 97879744 rs10507088 Breast cancer 5.12E-04 20852631
12 9528951 rs10743685 Gene expression of LOC728715 (probeID ILMN_1749875) in breast tumors 1.26E-07 22522925
12 28100554 rs10771396 Breast size (bra cup size in women) 1.07E-06 22747683
12 28110581 rs10771397 Breast size (bra cup size in women) 8.02E-07 22747683
12 28117485 rs10771398 Breast size (bra cup size in women) 1.17E-05 22747683
12 28155080 rs10771399 Breast cancer 8.00E-31 23535729
12 28155080 rs10771399 Breast cancer 8.10E-31 23535729
12 28155080 rs10771399 Breast cancer 2.00E-12 23535733
12 28155080 rs10771399 Breast cancer (Estrogen receptor negative breast cancer) 2.40E-12 23535733
12 28155080 rs10771399 "Breast cancer (estrogen-receptor negative, progesterone-receptor negative, and human epidermal growth factor-receptor negative)" 2.00E-08 24325915
12 28155080 rs10771399 Breast size (bra cup size in women) 5.87E-08 22747683
12 28155080 rs10771399 Breast Cancer in BRCA1 mutation carriers 8.00E-06 23544013
12 28155080 rs10771399 Breast cancer (Estrogen receptor negative breast cancer) 1.05E-05 22976474
12 28155080 rs10771399 Breast cancer (BRCA1-carriers) 2.70E-05 23544013
12 9358223 rs10771415 Breast size (bra cup size in women) 2.96E-05 22747683
12 9358995 rs10771418 Breast size (bra cup size in women) 1.56E-05 22747683
12 9380859 rs10771431 Breast size 2.00E-06 22747683
12 9380859 rs10771431 Breast size (bra cup size in women) 2.42E-06 22747683
12 30796015 rs10771748 Gene expression of IPO8 (probeID ILMN_1753164) in breast tumors 3.53E-299 22522925
12 32792974 rs10771973 Breast cancer risk (in BRCA1 mutation carriers) 5.82E-05 20852631
12 32792974 rs10771973 Breast cancer 2.28E-04 20852631
12 128767084 rs10773519 Adverse response to chemotherapy in breast cancer (alopecia) (paclitaxel) 8.41E-06 24025145
12 121009577 rs10774558 Gene expression of RNF10 (probeID ILMN_1697529) in breast tumors 1.05E-12 22522925
12 113361174 rs10774674 Gene expression of OAS1 (probeID ILMN_1658247) in breast tumors 4.46E-97 22522925
12 113361237 rs10774675 Gene expression of OAS1 (probeID ILMN_1658247) in breast tumors 2.80E-04 22522925
12 113374748 rs10774679 Gene expression of OAS1 (probeID ILMN_1658247) in breast tumors 4.95E-24 22522925
12 109893156 rs10774708 Gene expression of MMAB (probeID ILMN_1689156) in breast tumors 1.55E-09 22522925
12 51621910 rs10783424 Epirubicin-induced leukopenia in breast cancer 1.54E-05 21799462
12 56987179 rs10783794 Gene expression of RBMS2 (probeID ILMN_1755411) in breast tumors 9.02E-39 22522925
12 69737879 rs10784774 Gene expression of LYZ (probeID ILMN_1815205) in breast tumors 7.73E-04 22522925
12 28093612 rs10843026 Breast size (bra cup size in women) 2.99E-06 22747683
12 28093691 rs10843027 Breast size (bra cup size in women) 2.99E-06 22747683
12 28094671 rs10843028 Breast size (bra cup size in women) 2.53E-06 22747683
12 28094854 rs10843029 Breast size (bra cup size in women) 2.35E-06 22747683
12 28095013 rs10843030 Breast size (bra cup size in women) 9.54E-07 22747683
12 28099496 rs10843031 Breast size (bra cup size in women) 1.16E-06 22747683
12 28099788 rs10843032 Breast size (bra cup size in women) 1.16E-06 22747683
12 28100394 rs10843033 Breast size (bra cup size in women) 7.46E-06 22747683
12 28100397 rs10843034 Breast size (bra cup size in women) 7.43E-06 22747683
12 28106811 rs10843038 Breast size (bra cup size in women) 9.37E-07 22747683
12 28107253 rs10843039 Breast size (bra cup size in women) 9.11E-07 22747683
12 28110604 rs10843041 Breast size (bra cup size in women) 8.11E-07 22747683
12 28112948 rs10843042 Breast size (bra cup size in women) 8.96E-07 22747683
12 28124784 rs10843045 Breast size (bra cup size in women) 1.34E-05 22747683
12 28159763 rs10843053 Breast size (bra cup size in women) 2.88E-07 22747683
12 28160066 rs10843054 Breast size (bra cup size in women) 1.38E-08 22747683
12 28171821 rs10843055 Breast size (bra cup size in women) 1.06E-06 22747683
12 28172146 rs10843056 Breast size (bra cup size in women) 5.64E-05 22747683
12 28172342 rs10843057 Breast size (bra cup size in women) 2.03E-07 22747683
12 28172545 rs10843058 Breast size (bra cup size in women) 9.34E-08 22747683
12 28173195 rs10843059 Breast size (bra cup size in women) 1.01E-07 22747683
12 28174569 rs10843061 Breast size (bra cup size in women) 2.51E-07 22747683
12 28175040 rs10843062 Breast size (bra cup size in women) 9.54E-08 22747683
12 28175772 rs10843063 Breast size (bra cup size in women) 9.41E-08 22747683
12 28175787 rs10843064 Breast size (bra cup size in women) 1.02E-07 22747683
12 28176581 rs10843065 Breast size (bra cup size in women) 1.93E-05 22747683
12 28176797 rs10843066 Breast size (bra cup size in women) 2.40E-07 22747683
12 28176953 rs10843067 Breast size (bra cup size in women) 1.17E-07 22747683
12 28177181 rs10843068 Breast size (bra cup size in women) 1.09E-07 22747683
12 28177658 rs10843069 Breast size (bra cup size in women) 1.12E-07 22747683
12 28178764 rs10843071 Breast size (bra cup size in women) 1.01E-07 22747683
12 9357502 rs10843142 Breast size (bra cup size in women) 8.77E-05 22747683
12 9357577 rs10843144 Breast size (bra cup size in women) 8.77E-05 22747683
12 9362067 rs10843149 Breast size (bra cup size in women) 1.78E-05 22747683
12 9377702 rs10843175 Breast size (bra cup size in women) 3.35E-06 22747683
12 31237196 rs10843879 Gene expression of DDX11 (probeID ILMN_2345908) in breast tumors 4.79E-24 22522925
12 113990569 rs10850155 Gene expression of WDR34 (probeID ILMN_1685928) in breast tumors 6.85E-04 22522925
12 96027873 rs10859915 Breast size (bra cup size in women) 9.88E-05 22747683
12 104165387 rs10861095 Breast size (bra cup size in women) 7.31E-05 22747683
12 104170474 rs10861097 Breast size (bra cup size in women) 9.08E-05 22747683
12 18230673 rs11043837 Gene expression of VPS28 (probeID ILMN_2339863) in breast tumors 1.50E-04 22522925
12 23946146 rs11047102 Breast cancer 3.60E-05 23555315
12 28089820 rs11049229 Breast size (bra cup size in women) 2.05E-06 22747683
12 28091653 rs11049230 Breast size (bra cup size in women) 9.79E-06 22747683
12 28091700 rs11049231 Breast size (bra cup size in women) 3.60E-06 22747683
12 28092647 rs11049232 Breast size (bra cup size in women) 4.33E-06 22747683
12 28104792 rs11049238 Breast size (bra cup size in women) 9.26E-07 22747683
12 28115010 rs11049240 Breast size (bra cup size in women) 9.50E-07 22747683
12 28145898 rs11049260 Breast size (bra cup size in women) 4.79E-08 22747683
12 28160869 rs11049272 Breast size (bra cup size in women) 2.18E-05 22747683
12 28160978 rs11049273 Breast size (bra cup size in women) 4.45E-08 22747683
12 28161055 rs11049274 Breast size (bra cup size in women) 2.18E-06 22747683
12 28162341 rs11049275 Breast size (bra cup size in women) 2.26E-07 22747683
12 28162831 rs11049276 Breast size (bra cup size in women) 1.58E-07 22747683
12 28162879 rs11049277 Breast size (bra cup size in women) 1.57E-07 22747683
12 28163500 rs11049278 Breast size (bra cup size in women) 2.72E-06 22747683
12 28163763 rs11049279 Breast size (bra cup size in women) 5.72E-08 22747683
12 28163977 rs11049280 Breast size (bra cup size in women) 6.67E-08 22747683
12 28164386 rs11049281 Breast size (bra cup size in women) 9.40E-08 22747683
12 28164521 rs11049282 Breast size (bra cup size in women) 6.95E-08 22747683
12 28164633 rs11049283 Breast size (bra cup size in women) 8.33E-08 22747683
12 28171528 rs11049285 Breast size (bra cup size in women) 8.67E-08 22747683
12 28171747 rs11049286 Breast size (bra cup size in women) 9.14E-08 22747683
12 28173137 rs11049289 Breast size (bra cup size in women) 9.89E-08 22747683
12 28174679 rs11049290 Breast size (bra cup size in women) 1.05E-07 22747683
12 28177171 rs11049291 Breast size (bra cup size in women) 2.99E-07 22747683
12 28179482 rs11049292 Breast size (bra cup size in women) 1.27E-07 22747683
12 28179701 rs11049293 Breast size (bra cup size in women) 9.48E-08 22747683
12 28181403 rs11049294 Breast size (bra cup size in women) 4.89E-07 22747683
12 28182252 rs11049295 Breast size (bra cup size in women) 1.28E-07 22747683
12 9385339 rs11049697 Breast size (bra cup size in women) 2.21E-05 22747683
12 126940768 rs11058659 Breast cancer 5.20E-04 23555315
12 128758519 rs11059618 Adverse response to chemotherapy in breast cancer (alopecia) (paclitaxel) 1.18E-06 24025145
12 128782022 rs11059635 Adverse response to chemotherapy in breast cancer (alopecia) (paclitaxel) 2.00E-07 24025145
12 120146925 rs11064881 Gene expression of PRKAB1 (probeID ILMN_1793522) in breast tumors 4.50E-07 22522925
12 121680460 rs11065504 Gene expression of CAMKK2 (probeID ILMN_2367638) in breast tumors 2.99E-76 22522925
12 121680460 rs11065504 Gene expression of CAMKK2 (probeID ILMN_1743021) in breast tumors 1.47E-66 22522925
12 94801321 rs11107531 Plasma estradiol concentration in women with breast cancer 8.31E-07 23518928
12 100042040 rs11109968 Breast cancer 1.10E-04 23555315
12 100042163 rs11109969 Breast cancer 2.60E-04 23555315
12 103607446 rs11111497 Breast size (bra cup size in women) 8.15E-05 22747683
12 103608767 rs11111498 Breast size (bra cup size in women) 9.67E-05 22747683
12 104161084 rs11111758 Breast size (bra cup size in women) 9.87E-05 22747683
12 104170124 rs11111762 Breast size (bra cup size in women) 9.06E-05 22747683
12 104170148 rs11111763 Breast size (bra cup size in women) 9.06E-05 22747683
12 56470625 rs11171739 Gene expression of LOC650298 (probeID ILMN_1737991) in breast tumors 3.50E-197 22522925
12 56470625 rs11171739 Gene expression of RPS26 (probeID ILMN_2209027) in breast tumors 8.71E-126 22522925
12 56470625 rs11171739 Gene expression of CCDC4 (probeID ILMN_1740094) in breast tumors 1.47E-89 22522925
12 58170335 rs11172333 Gene expression of FAM119B (probeID ILMN_1723846) in breast tumors 1.33E-18 22522925
12 68507468 rs11177059 Gene expression of KIAA1754 (probeID ILMN_1805192) in breast tumors 7.36E-04 22522925
12 68791434 rs11177201 Breast size (bra cup size in women) 2.81E-05 22747683
12 9372728 rs1117735 Breast size (bra cup size in women) 4.62E-06 22747683
12 70139673 rs11177823 Gene expression of RAB3IP (probeID ILMN_1803197) in breast tumors 3.66E-21 22522925
12 14993439 rs11276 Breast cancer 4.40E-04 23555315
12 93709539 rs1135400 Gene expression of LOC643339 (probeID ILMN_1727852) in breast tumors 6.05E-07 22522925
12 28184861 rs113794488 Breast size (bra cup size in women) 1.31E-05 22747683
12 28158922 rs11519090 Breast size (bra cup size in women) 1.70E-07 22747683
12 54963907 rs1153138 Recurrence-free survival in breast cancer patients receiving tamoxifen therapy 5.48E-08 22180457
12 54963907 rs1153138 Response to tamoxifen in breast cancer 6.83E-06 22180457
12 73989837 rs1154865 Breast cancer 6.60E-07 17903305
12 73989837 rs1154865 Breast cancer 7.00E-07 17903305
12 132093024 rs11609565 Breast cancer 2.80E-04 19219042
12 9385535 rs11611670 Breast size (bra cup size in women) 5.04E-06 22747683
12 28177887 rs11612977 Breast size (bra cup size in women) 1.33E-07 22747683
12 94532765 rs11613298 Breast cancer 5.00E-06 23468962
12 17536443 rs1163971 Breast cancer risk (in BRCA1 mutation carriers) 2.49E-05 20852631
12 122338566 rs1168658 Gene expression of PSMD9 (probeID ILMN_1732767) in breast tumors 5.24E-04 22522925
12 66513111 rs1168765 Gene expression of TMBIM4 (probeID ILMN_1664750) in breast tumors 6.08E-09 22522925
12 44130330 rs116948464 Breast cancer 1.30E-04 23555315
12 101738482 rs117417637 Breast cancer 3.20E-04 23555315
12 20463433 rs11835323 Breast size (bra cup size in women) 6.69E-05 22747683
12 96027467 rs11836367 Breast size (bra cup size in women) 1.05E-05 22747683
12 28108574 rs12227702 Breast size (bra cup size in women) 8.62E-07 22747683
12 10117683 rs12229020 Gene expression of CLEC12A (probeID ILMN_2292178) in breast tumors 8.26E-36 22522925
12 28108688 rs12230367 Breast size (bra cup size in women) 7.35E-07 22747683
12 28179075 rs12230582 Breast size (bra cup size in women) 1.01E-07 22747683
12 28178155 rs12231591 Breast size (bra cup size in women) 1.23E-07 22747683
12 47949145 rs12304191 Breast cancer (BRCA2-positive) 1.81E-04 21060860
12 84159948 rs12310281 Epirubicin-induced leukopenia in breast cancer 4.18E-05 21799462
12 28113521 rs12370614 Breast size (bra cup size in women) 6.26E-07 22747683
12 28156081 rs12371778 Breast size 1.00E-08 22747683
12 28156081 rs12371778 Breast size (bra cup size in women) 1.03E-08 22747683
12 14413931 rs12422552 Breast cancer 3.70E-08 23535729
12 14413931 rs12422552 Breast cancer 4.00E-08 23535729
12 14413931 rs12422552 Breast cancer (invasive breast cancer) 1.90E-04 23535729
12 28143978 rs1267204 Breast size (bra cup size in women) 2.01E-05 22747683
12 28143787 rs1267205 Breast size (bra cup size in women) 9.30E-08 22747683
12 28143712 rs1267206 Breast size (bra cup size in women) 2.12E-08 22747683
12 28142950 rs1267208 Breast size (bra cup size in women) 9.42E-08 22747683
12 28140918 rs1267210 Breast size (bra cup size in women) 9.17E-08 22747683
12 28140829 rs1267211 Breast size (bra cup size in women) 2.24E-05 22747683
12 28140714 rs1267212 Breast size (bra cup size in women) 1.05E-07 22747683
12 28140675 rs1267213 Breast size (bra cup size in women) 7.49E-08 22747683
12 28145421 rs1270113 Breast size (bra cup size in women) 7.57E-08 22747683
12 76258552 rs1275584 Breast cancer total mortality 1.50E-05 22232737
12 76258552 rs1275584 Breast cancer recurrence 3.40E-05 22232737
12 115836522 rs1292011 Breast cancer 8.90E-22 23535729
12 115836522 rs1292011 Breast cancer 9.00E-22 23535729
12 28140277 rs1314084 Breast size (bra cup size in women) 1.32E-05 22747683
12 28140253 rs1314085 Breast size (bra cup size in women) 9.45E-08 22747683
12 96075293 rs1362972 Breast size (bra cup size in women) 9.27E-05 22747683
12 96048862 rs140676876 Breast size (bra cup size in women) 5.71E-05 22747683
12 6128454 rs141211612 Breast cancer (Estrogen receptor negative breast cancer) 1.60E-05 23555315
12 69113390 rs142470451 Breast cancer 4.60E-05 23555315
12 51457921 rs142643949 Breast cancer (Estrogen receptor negative breast cancer) 2.00E-05 23555315
12 132322812 rs143543400 Breast cancer (Estrogen receptor negative breast cancer) 1.10E-05 23555315
12 15734702 rs144347297 Breast cancer (Estrogen receptor negative breast cancer) 3.00E-07 23555315
12 15734702 rs144347297 Breast cancer 2.90E-05 23555315
12 9020509 rs144876785 Breast cancer 2.20E-04 23555315
12 63241823 rs148028838 Breast size (bra cup size in women) 8.76E-05 22747683
12 13102576 rs149059133 Breast cancer 7.10E-04 23555315
12 65810174 rs1494505 Breast cancer 7.10E-04 23555315
12 992587 rs150532648 Breast cancer 2.50E-04 23555315
12 7528404 rs150856487 Breast cancer (Estrogen receptor negative breast cancer) 3.80E-05 23555315
12 20062497 rs1586840 Breast cancer 6.45E-08 20852631
12 104167024 rs15918 Breast size (bra cup size in women) 9.52E-05 22747683
12 104979879 rs1626044 Breast cancer early age of onset 3.98E-04 18463975
12 104980310 rs1650137 Breast cancer early age of onset 3.98E-04 18463975
12 128080561 rs1683611 Breast cancer recurrence 2.00E-06 22232737
12 128080561 rs1683611 Breast cancer total mortality 5.20E-04 22232737
12 28181233 rs16932559 Breast size (bra cup size in women) 1.32E-07 22747683
12 51471152 rs17125346 Gene expression of TFCP2 (probeID ILMN_1738750) in breast tumors 2.22E-20 22522925
12 9361850 rs17202253 Breast size (bra cup size in women) 2.37E-05 22747683
12 14410485 rs17221259 Breast cancer 7.00E-06 24143190
12 67634919 rs1732534 Breast cancer 2.40E-04 21908515
12 96027759 rs17356907 Breast cancer 1.80E-22 23535729
12 96027759 rs17356907 Breast cancer 2.00E-22 23535729
12 96027759 rs17356907 Breast cancer (invasive breast cancer) 2.20E-16 23535729
12 96027759 rs17356907 Breast cancer (Estrogen receptor positive breast cancer) 1.20E-14 23535729
12 96027759 rs17356907 Breast size 1.00E-06 22747683
12 96027759 rs17356907 Breast size (bra cup size in women) 1.42E-06 22747683
12 96027759 rs17356907 Breast cancer 9.00E-06 23535733
12 96027759 rs17356907 Breast cancer (Estrogen receptor negative breast cancer) 9.30E-06 23535733
12 121592689 rs17525809 Breast cancer 7.30E-04 23555315
12 30906358 rs17688567 Breast cancer 3.90E-04 23555315
12 9361783 rs17794353 Breast size (bra cup size in women) 2.42E-05 22747683
12 77216281 rs17813975 Gene expression of ZDHHC17 (probeID ILMN_1697153) in breast tumors 7.71E-05 22522925
12 28154895 rs1838564 Breast size (bra cup size in women) 1.02E-07 22747683
12 68468711 rs1861487 Breast size (bra cup size in women) 9.30E-05 22747683
12 56379427 rs1873914 Gene expression of RPS26 (probeID ILMN_2209027) in breast tumors 7.33E-08 22522925
12 56379427 rs1873914 Gene expression of C4ORF30 (probeID ILMN_1753440) in breast tumors 1.46E-07 22522925
12 28114318 rs1974747 Breast size (bra cup size in women) 9.34E-07 22747683
12 42641597 rs1988893 Gene expression of GLT8D3 (probeID ILMN_1747183) in breast tumors 6.14E-05 22522925
12 9020859 rs200176373 Breast cancer 2.60E-04 23555315
12 56998559 rs201075316 Breast cancer 7.10E-06 23555315
12 28158800 rs202041116 Breast size (bra cup size in women) 2.97E-07 22747683
12 41602355 rs2043134 Breast cancer early age of onset 1.18E-04 18463975
12 17530450 rs2055301 Breast cancer risk (in BRCA1 mutation carriers) 9.56E-05 20852631
12 6637845 rs2072374 Breast cancer 4.10E-04 23555315
12 15070635 rs2193356 Gene expression of ERP27 (probeID ILMN_1655261) in breast tumors 7.78E-26 22522925
12 55140402 rs2198600 Breast cancer 4.14E-07 20852631
12 6965194 rs2226955 Gene expression of SPSB2 (probeID ILMN_1787541) in breast tumors 1.44E-10 22522925
12 120676090 rs2239206 Gene expression of GCN1L1 (probeID ILMN_1734312) in breast tumors 7.31E-14 22522925
12 46580618 rs2241960 Gene expression of SLC38A1 (probeID ILMN_1769911) in breast tumors 8.13E-04 22522925
12 104291595 rs2243680 Breast cancer early age of onset 2.94E-04 18463975
12 6570539 rs2244083 Gene expression of TAPBPL (probeID ILMN_1805449) in breast tumors 9.84E-12 22522925
12 52938320 rs2292506 Breast cancer 3.30E-05 23555315
12 69646914 rs2305641 Gene expression of LYZ (probeID ILMN_1815205) in breast tumors 1.63E-15 22522925
12 28093114 rs2347589 Breast size (bra cup size in women) 3.08E-06 22747683
12 58329820 rs2372309 Gene expression of XRCC6BP1 (probeID ILMN_1767481) in breast tumors 9.75E-17 22522925
12 9879084 rs2401393 Gene expression of CLECL1 (probeID ILMN_1782729) in breast tumors 4.70E-38 22522925
12 21591847 rs2417981 Gene expression of LOC642732 (probeID ILMN_1651507) in breast tumors 8.38E-26 22522925
12 28146490 rs251950 Breast size (bra cup size in women) 7.04E-08 22747683
12 28145950 rs251952 Breast size (bra cup size in women) 7.02E-08 22747683
12 28144471 rs251954 Breast size (bra cup size in women) 2.20E-05 22747683
12 28143462 rs251955 Breast size (bra cup size in women) 9.61E-08 22747683
12 6585610 rs2532520 Gene expression of VAMP1 (probeID ILMN_1737611) in breast tumors 9.95E-08 22522925
12 69108448 rs2546513 Breast cancer 6.24E-04 21424380
12 41545725 rs2567034 Breast cancer early age of onset 2.71E-04 18463975
12 28166067 rs2590275 Breast size (bra cup size in women) 3.04E-06 22747683
12 28161156 rs2619411 Breast size (bra cup size in women) 6.05E-08 22747683
12 28153747 rs2619415 Breast size (bra cup size in women) 4.51E-08 22747683
12 28166057 rs2619433 Breast size (bra cup size in women) 4.82E-08 22747683
12 28165457 rs2619434 Breast size (bra cup size in women) 2.48E-06 22747683
12 28165457 rs2619434 "Breast cancer (estrogen-receptor negative, progesterone-receptor negative, and human epidermal growth factor-receptor negative)" 1.00E-05 24325915
12 28165457 rs2619434 Breast cancer (Estrogen receptor negative breast cancer) 2.59E-05 22976474
12 10564329 rs2734562 Breast cancer (Estrogen receptor negative breast cancer) 8.09E-05 22976474
12 28153527 rs2737447 Breast size (bra cup size in women) 2.26E-07 22747683
12 28153260 rs2737448 Breast size (bra cup size in women) 4.89E-08 22747683
12 28149614 rs2737455 Breast size (bra cup size in women) 1.37E-07 22747683
12 28149612 rs2737456 Breast size (bra cup size in women) 4.52E-05 22747683
12 53071382 rs2741159 Gene expression of KRT1 (probeID ILMN_1735712) in breast tumors 1.01E-10 22522925
12 28116111 rs2796 Breast size (bra cup size in women) 9.78E-07 22747683
12 41546220 rs281840 Breast cancer early age of onset 2.04E-04 18463975
12 121177159 rs28940872 Breast cancer 7.10E-06 23555315
12 9917106 rs3176774 Breast cancer total mortality 1.60E-04 22232737
12 56363666 rs3213122 Gene expression of SILV (probeID ILMN_1665994) in breast tumors 1.71E-19 22522925
12 57486647 rs324019 Gene expression of STAT6 (probeID ILMN_1763198) in breast tumors 1.61E-41 22522925
12 9392362 rs34365 Breast size (bra cup size in women) 8.79E-06 22747683
12 42863262 rs34837068 Breast cancer 2.80E-04 23555315
12 113603678 rs35080925 Breast cancer (Estrogen receptor positive breast cancer) 3.20E-04 23555315
12 65656484 rs35621308 Gene expression of LEMD3 (probeID ILMN_2183938) in breast tumors 2.14E-135 22522925
12 104170872 rs3812805 Breast size (bra cup size in women) 9.47E-05 22747683
12 92827601 rs394283 Gene expression of CLLU1OS (probeID ILMN_2124221) in breast tumors 1.14E-07 22522925
12 28093365 rs4035314 Breast size (bra cup size in women) 3.06E-06 22747683
12 12815037 rs41276680 Breast cancer (Estrogen receptor negative breast cancer) 1.90E-05 23555315
12 72131620 rs4146372 Breast cancer 7.00E-05 17903305
12 15035081 rs4236 Breast cancer 4.60E-04 23555315
12 121859919 rs4640009 Gene expression of RNF34 (probeID ILMN_2398664) in breast tumors 2.85E-22 22522925
12 94683204 rs4761470 Estradiol plasma levels (breast cancer) 6.00E-07 23518928
12 94683204 rs4761470 Plasma estradiol concentration in women with breast cancer 6.14E-07 23518928
12 95704988 rs4762354 Gene expression of VEZT (probeID ILMN_1774828) in breast tumors 8.79E-15 22522925
12 11175414 rs4763235 Gene expression of PRR4 (probeID ILMN_1753665) in breast tumors 8.97E-08 22522925
12 10757525 rs4763562 Gene expression of MAGOHB (probeID ILMN_1676058) in breast tumors 1.48E-05 22522925
12 109890080 rs4766601 Gene expression of KCTD10 (probeID ILMN_1719064) in breast tumors 5.13E-193 22522925
12 104168269 rs4964298 Breast size (bra cup size in women) 8.61E-05 22747683
12 104165864 rs4981032 Breast size (bra cup size in women) 7.67E-05 22747683
12 72322443 rs5019656 Gene expression of TBC1D15 (probeID ILMN_1803941) in breast tumors 1.01E-05 22522925
12 28161748 rs56003999 Breast size (bra cup size in women) 7.18E-08 22747683
12 31257695 rs56581432 Gene expression of DDX11 (probeID ILMN_2345908) in breast tumors 1.30E-12 22522925
12 28103594 rs57454081 Breast size (bra cup size in women) 1.01E-06 22747683
12 28181020 rs57498301 Breast size (bra cup size in women) 3.23E-07 22747683
12 94683204 rs575315089 Estradiol plasma levels (breast cancer) 6.00E-07 23518928
12 10277906 rs59819090 Breast cancer (Estrogen receptor negative breast cancer) 4.20E-05 23555315
12 28181174 rs60240939 Breast size (bra cup size in women) 1.00E-05 22747683
12 96026737 rs61938093 Breast size (bra cup size in women) 1.97E-06 22747683
12 96037389 rs61938101 Breast size (bra cup size in women) 7.29E-05 22747683
12 28116062 rs6244 Breast size (bra cup size in women) 1.03E-05 22747683
12 28116057 rs6245 Breast size (bra cup size in women) 1.03E-05 22747683
12 28114816 rs6248 Breast size (bra cup size in women) 9.62E-07 22747683
12 28111073 rs6252 Breast size (bra cup size in women) 7.18E-07 22747683
12 1910786 rs62621429 Breast cancer 2.90E-04 23555315
12 30781912 rs6487923 Gene expression of IPO8 (probeID ILMN_1753164) in breast tumors 1.53E-68 22522925
12 31225474 rs6487970 Gene expression of DDX11 (probeID ILMN_2345908) in breast tumors 7.59E-106 22522925
12 127882841 rs6489171 Breast cancer 1.49E-06 20872241
12 6643316 rs6489721 Gene expression of GAPDH (probeID ILMN_1343295) in breast tumors 1.90E-05 22522925
12 41580177 rs6582240 Breast cancer early age of onset 2.04E-04 18463975
12 6992122 rs7132019 Gene expression of SPSB2 (probeID ILMN_1787541) in breast tumors 3.38E-51 22522925
12 117373758 rs7133090 Gene expression of FBXW8 (probeID ILMN_2342793) in breast tumors 4.99E-05 22522925
12 110000193 rs7134594 Breast cancer(er negative) 6.90E-05 23555315
12 110000193 rs7134594 Breast cancer 1.30E-04 23555315
12 125825114 rs7134868 Breast cancer 1.12E-04 pha002853
12 50529936 rs7136570 Gene expression of LASS5 (probeID ILMN_2208495) in breast tumors 1.11E-22 22522925
12 9372029 rs7137443 Breast size (bra cup size in women) 6.04E-06 22747683
12 106890059 rs721438 Breast size (bra cup size in women) 8.59E-05 22747683
12 8394377 rs72540359 Gene expression of LOC653113 (probeID ILMN_1651232) in breast tumors 9.68E-45 22522925
12 28174817 rs7297051 Breast size (bra cup size in women) 3.20E-08 22747683
12 109937534 rs7298565 Breast cancer 2.80E-04 23555315
12 9374693 rs7300786 Breast size (bra cup size in women) 4.79E-06 22747683
12 9374819 rs7300939 Breast size (bra cup size in women) 3.05E-06 22747683
12 9374919 rs7301059 Breast size (bra cup size in women) 4.74E-06 22747683
12 50537815 rs7302981 Gene expression of LASS5 (probeID ILMN_2208495) in breast tumors 1.18E-99 22522925
12 121404056 rs7303401 Gene expression of C12ORF43 (probeID ILMN_1737818) in breast tumors 4.89E-36 22522925
12 96907972 rs7308077 Breast cancer 6.05E-07 20852631
12 89149235 rs7310517 Breast cancer risk (in BRCA1 mutation carriers) 7.47E-06 20852631
12 124172731 rs7313032 Gene expression of DDX55 (probeID ILMN_1797425) in breast tumors 1.22E-18 22522925
12 28083196 rs7313833 Breast cancer 6.00E-06 17529967
12 51614050 rs7399073 Epirubicin-induced leukopenia in breast cancer 4.71E-05 21799462
12 96355432 rs7485085 Gene expression of AMDHD1 (probeID ILMN_1788239) in breast tumors 1.10E-07 22522925
12 28113911 rs74969426 Breast size (bra cup size in women) 9.20E-07 22747683
12 104167185 rs751448 Breast size (bra cup size in women) 9.44E-05 22747683
12 28102840 rs78100630 Breast size (bra cup size in women) 1.02E-06 22747683
12 120926319 rs787820 Gene expression of GATC (probeID ILMN_1809034) in breast tumors 1.10E-19 22522925
12 28167619 rs788455 Breast size (bra cup size in women) 3.72E-07 22747683
12 28167635 rs788456 Breast size (bra cup size in women) 2.01E-05 22747683
12 28170089 rs788457 Breast size (bra cup size in women) 1.60E-08 22747683
12 28149568 rs788458 Breast size (bra cup size in women) 9.75E-08 22747683
12 28149659 rs788459 Breast size (bra cup size in women) 8.12E-08 22747683
12 28150272 rs788460 Breast size (bra cup size in women) 2.03E-05 22747683
12 28150488 rs788461 Breast size (bra cup size in women) 3.16E-05 22747683
12 28151018 rs788462 Breast size (bra cup size in women) 5.33E-08 22747683
12 28152648 rs788463 Breast size (bra cup size in women) 5.54E-08 22747683
12 28153018 rs788464 Breast size (bra cup size in women) 6.84E-08 22747683
12 55641811 rs79165229 Breast cancer 8.90E-04 23555315
12 6603917 rs7955645 Gene expression of NCAPD2 (probeID ILMN_1775008) in breast tumors 1.31E-05 22522925
12 28180502 rs7957915 Breast cancer (BRCA1-carriers) 8.10E-06 23544013
12 28180502 rs7957915 Breast size (bra cup size in women) 3.96E-05 22747683
12 27130165 rs7958443 Gene expression of TM7SF3 (probeID ILMN_1803995) in breast tumors 6.58E-15 22522925
12 28173672 rs7958748 Breast size (bra cup size in women) 3.83E-05 22747683
12 6605105 rs7960757 Gene expression of NCAPD2 (probeID ILMN_1775008) in breast tumors 3.25E-34 22522925
12 121405644 rs7961178 Gene expression of C12ORF43 (probeID ILMN_1737818) in breast tumors 7.23E-11 22522925
12 29439588 rs7964831 Gene expression of CHIC2 (probeID ILMN_1679428) in breast tumors 1.67E-04 22522925
12 110302270 rs7966820 Breast cancer 4.00E-04 20585626
12 42481732 rs7972986 Breast cancer 1.40E-04 23555315
12 20438338 rs7975807 Breast size (bra cup size in women) 7.02E-05 22747683
12 28183286 rs7976725 Breast size (bra cup size in women) 1.20E-05 22747683
12 103610821 rs7977336 Breast size (bra cup size in women) 8.56E-05 22747683
12 9377322 rs7978537 Breast size (bra cup size in women) 3.34E-06 22747683
12 9377437 rs7978746 Breast size (bra cup size in women) 3.58E-06 22747683
12 124092004 rs80215100 Breast cancer 2.20E-04 23555315
12 28139846 rs805510 Breast size (bra cup size in women) 3.24E-07 22747683
12 28139733 rs805511 Breast size (bra cup size in women) 1.91E-05 22747683
12 28148641 rs805513 Breast size (bra cup size in women) 6.39E-08 22747683
12 28147081 rs805515 Breast size (bra cup size in women) 6.41E-08 22747683
12 28152993 rs805583 Breast size (bra cup size in women) 1.00E-05 22747683
12 28167601 rs809291 Breast size (bra cup size in women) 6.01E-07 22747683
12 28170174 rs809816 Breast size (bra cup size in women) 8.47E-08 22747683
12 28151609 rs812020 Breast size (bra cup size in women) 2.94E-06 22747683
12 28152044 rs813722 Breast size (bra cup size in women) 2.01E-05 22747683
12 120900274 rs9040 Gene expression of COQ5 (probeID ILMN_1770936) in breast tumors 1.61E-06 22522925
12 104166243 rs9132 Breast size (bra cup size in women) 9.65E-05 22747683
12 104173310 rs954920 Breast size (bra cup size in women) 9.88E-05 22747683
12 109994870 rs9593 Breast cancer (Estrogen receptor negative breast cancer) 4.90E-05 23555315
12 109994870 rs9593 Breast cancer 1.50E-04 23555315
12 120760792 rs9657942 Gene expression of SIRT4 (probeID ILMN_1657868) in breast tumors 9.35E-10 22522925
12 31541218 rs9669480 Gene expression of DENND5B (probeID ILMN_1791593) in breast tumors 1.26E-16 22522925
12 28114643 rs967 Breast size (bra cup size in women) 9.39E-07 22747683
12 28119384 rs997199 Breast size (bra cup size in women) 1.44E-05 22747683
Chr Position SNPID Disease/Trait name pvalue PMID

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