The Genomic Atlas of Breast Cancer — the non-coding theme

Update News

  • GABC update 2020.06.15
  • GABC update 2019.03.20
  • GABC online 2018.08.09
  • Data collection 2018.04.09

About Us

  • Steven Xi Chen:
    steven.chen@miami.edu
  • Yunpeng Zhang:
    YXZ1418@med.miami.edu
  • Peng Wang:
    wpgqy@163.com
  • Shangwei Ning:
    ningsw@ems.hrbmu.edu.cn
  • Xia Li:
    lixia@hrbmu.edu.cn

Breast cancer associated SNPs

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Chr Position SNPID Disease/Trait name pvalue PMID
3 27241776 rs10049490 Breast cancer (early onset) 2.93E-10 24493630
3 107757086 rs1006044 Gene expression of CD47 (probeID ILMN_2356991) in breast tumors 6.18E-27 22522925
3 89484268 rs1028013 Gene expression of EPHA3 (probeID ILMN_1775931) in breast tumors 9.25E-13 22522925
3 6416779 rs10510333 Breast cancer 8.20E-06 22923054
3 177199160 rs10513754 Breast cancer 2.80E-05 17903305
3 61413814 rs10514718 Breast cancer 2.40E-04 23555315
3 39138082 rs1053530 Gene expression of WDR48 (probeID ILMN_1762103) in breast tumors 1.45E-68 22522925
3 124377196 rs10804562 Breast cancer (BRCA2-positive) 2.16E-04 21060860
3 125685322 rs10934739 Gene expression of LOC200810 (probeID ILMN_1782084) in breast tumors 3.12E-04 22522925
3 65454372 rs1112403 Gene expression of TRPM6 (probeID ILMN_1814296) in breast tumors 1.70E-04 22522925
3 27257943 rs11129270 Breast cancer (early onset) 1.42E-10 24493630
3 37257793 rs11129752 Gene expression of LRRFIP2 (probeID ILMN_1772329) in breast tumors 1.73E-04 22522925
3 58370792 rs11130633 Gene expression of PDHB (probeID ILMN_1739274) in breast tumors 4.66E-05 22522925
3 186940130 rs111674293 Breast size (bra cup size in women) 4.09E-05 22747683
3 62581871 rs112039220 Breast size (bra cup size in women) 7.94E-05 22747683
3 130921972 rs112166978 Breast size (bra cup size in women) 1.84E-06 22747683
3 122497538 rs112178314 Breast size (bra cup size in women) 3.13E-05 22747683
3 119150491 rs1132202 Gene expression of KTELC1 (probeID ILMN_1811104) in breast tumors 1.13E-06 22522925
3 122497353 rs114342323 Breast size (bra cup size in women) 7.78E-05 22747683
3 62468283 rs114398202 Breast size (bra cup size in women) 6.14E-05 22747683
3 130947635 rs114580404 Breast size (bra cup size in women) 4.63E-07 22747683
3 88766191 rs114858300 Breast size (bra cup size in women) 8.55E-05 22747683
3 130941903 rs114889515 Breast size (bra cup size in women) 7.65E-07 22747683
3 130894698 rs115838196 Breast size (bra cup size in women) 1.64E-05 22747683
3 38355325 rs116741759 Breast cancer (Estrogen receptor positive breast cancer) 3.10E-04 23555315
3 147677650 rs11711782 Breast cancer 3.83E-05 21263130
3 53070875 rs11712653 Gene expression of ITIH4 (probeID ILMN_1718525) in breast tumors 1.70E-09 22522925
3 45201862 rs11719352 Gene expression of OTOF (probeID ILMN_1663347) in breast tumors 8.51E-04 22522925
3 60763256 rs11919041 Breast size (bra cup size in women) 1.79E-06 22747683
3 60763256 rs11919041 Breast size 2.00E-06 22747683
3 121439592 rs11919421 Gene expression of HCLS1 (probeID ILMN_1727402) in breast tumors 5.55E-05 22522925
3 23990414 rs11922609 Gene expression of NR1D2 (probeID ILMN_1698668) in breast tumors 8.61E-51 22522925
3 116699869 rs11926630 Breast size (bra cup size in women) 4.75E-05 22747683
3 102181131 rs12054046 Breast cancer 3.20E-05 23555315
3 139253871 rs12485273 Gene expression of RBP1 (probeID ILMN_1656837) in breast tumors 3.72E-20 22522925
3 27208975 rs12487340 Breast cancer (early onset) 3.88E-11 24493630
3 188518434 rs12487595 Breast cancer 8.80E-06 22452962
3 30682939 rs12493607 Breast cancer 2.00E-08 23535729
3 30682939 rs12493607 Breast cancer 2.30E-08 23535729
3 30682939 rs12493607 Breast cancer (invasive breast cancer) 3.40E-08 23535729
3 30682939 rs12493607 Breast cancer (Estrogen receptor positive breast cancer) 1.00E-07 23535729
3 133913889 rs12631354 Gene expression of HS.158923 (probeID ILMN_1818617) in breast tumors 1.75E-12 22522925
3 50157895 rs12636232 Gene expression of MON1A (probeID ILMN_1696151) in breast tumors 7.98E-10 22522925
3 39124132 rs12636980 Gene expression of WDR48 (probeID ILMN_1762103) in breast tumors 4.23E-07 22522925
3 102938744 rs13071097 Breast cancer (BRCA2-positive) 3.94E-04 21060860
3 66483900 rs13071657 Gene expression of SLC25A26 (probeID ILMN_1750981) in breast tumors 2.23E-04 22522925
3 41262444 rs13072632 Gene expression of CTNNB1 (probeID ILMN_1757350) in breast tumors 7.73E-06 22522925
3 41262444 rs13072632 Gene expression of CTNNB1 (probeID ILMN_1746396) in breast tumors 6.93E-05 22522925
3 172267803 rs13074711 Breast cancer 2.10E-06 22923054
3 60763089 rs13084123 Breast size (bra cup size in women) 7.58E-06 22747683
3 126942965 rs13095826 Adverse response to chemotherapy in breast cancer (alopecia) (docetaxel) 4.49E-06 24025145
3 122792686 rs13434289 Breast cancer early age of onset 3.27E-04 18463975
3 71854868 rs1343953 Breast cancer 2.77E-05 20872241
3 172661239 rs1353868 "Breast cancer (estrogen-receptor negative, progesterone-receptor negative, and human epidermal growth factor-receptor negative)" 2.60E-05 24325915
3 27186602 rs1357245 Breast cancer 1.90E-07 19330027
3 47447473 rs138320436 Breast cancer 2.10E-04 23555315
3 14180693 rs139590716 Breast cancer (Estrogen receptor positive breast cancer) 2.60E-04 23555315
3 48637143 rs139999010 Breast cancer 5.40E-04 23555315
3 67007841 rs140045862 Breast size (bra cup size in women) 8.31E-05 22747683
3 116373807 rs1401083 Breast cancer risk (in BRCA1 mutation carriers) 9.94E-05 20852631
3 116704634 rs140255812 Breast size (bra cup size in women) 8.16E-06 22747683
3 130916109 rs140672692 Breast size (bra cup size in women) 2.44E-06 22747683
3 14755667 rs141714657 Breast cancer 9.30E-06 23555315
3 14755667 rs141714657 Breast cancer (Estrogen receptor positive breast cancer) 3.30E-04 23555315
3 46501168 rs141854619 Breast cancer 4.00E-04 23555315
3 130926633 rs142010393 Breast size (bra cup size in women) 9.84E-05 22747683
3 130840701 rs142433822 Breast size (bra cup size in women) 3.30E-05 22747683
3 44943399 rs142655195 Breast cancer 7.70E-04 23555315
3 172232682 rs143353036 Breast cancer (Estrogen receptor positive breast cancer) 3.40E-05 23555315
3 172232682 rs143353036 Breast cancer 8.00E-05 23555315
3 57902766 rs143689400 Breast cancer 9.20E-04 23555315
3 61066987 rs1439008 Breast cancer recurrence 6.00E-04 22232737
3 367705 rs144055818 Breast cancer 2.50E-05 23555315
3 27253971 rs1445111 Breast cancer (early onset) 1.32E-10 24493630
3 101476645 rs145072852 Breast cancer (Estrogen receptor positive breast cancer) 2.90E-04 23555315
3 101476645 rs145072852 Breast cancer 7.50E-04 23555315
3 130879161 rs145230133 Breast size (bra cup size in women) 2.33E-05 22747683
3 193332564 rs145565705 Breast cancer (Estrogen receptor negative breast cancer) 4.50E-05 23555315
3 180321090 rs145653627 Breast cancer 4.30E-04 23555315
3 130917068 rs146756468 Breast size (bra cup size in women) 2.45E-05 22747683
3 27427225 rs1472254 Breast cancer (early onset) 5.76E-10 24493630
3 116706787 rs147293922 Breast size (bra cup size in women) 9.45E-05 22747683
3 130929104 rs148112583 Breast size (bra cup size in women) 7.13E-05 22747683
3 25309054 rs1483851 Breast cancer 4.30E-05 22923054
3 50006026 rs148635727 Breast cancer 1.20E-04 23555315
3 193106126 rs1489924 Gene expression of ADK (probeID ILMN_2358628) in breast tumors 6.95E-04 22522925
3 44635975 rs149108320 Breast cancer (Estrogen receptor negative breast cancer) 1.40E-05 23555315
3 52409393 rs149319231 Breast cancer (Estrogen receptor negative breast cancer) 1.00E-05 23555315
3 148575278 rs149931188 Breast cancer 1.00E-04 23555315
3 112072583 rs150103287 Breast size (bra cup size in women) 8.56E-05 22747683
3 62752388 rs1506749 Breast size (bra cup size in women) 4.14E-05 22747683
3 102856989 rs1515534 Breast cancer (Estrogen receptor negative breast cancer) 2.29E-05 22976474
3 3193676 rs1669342 Gene expression of TRNT1 (probeID ILMN_1655924) in breast tumors 9.93E-12 22522925
3 177337534 rs16828300 Breast cancer early age of onset 4.89E-04 18463975
3 181851284 rs16832889 Estradiol plasma levels (breast cancer) 1.00E-06 23518928
3 181851284 rs16832889 Plasma estradiol concentration in women with breast cancer 1.20E-06 23518928
3 130855322 rs16835947 Breast size (bra cup size in women) 3.53E-05 22747683
3 132432857 rs16839527 Gene expression of NPHP3 (probeID ILMN_1730539) in breast tumors 3.10E-09 22522925
3 172835082 rs16846616 Breast cancer (Estrogen receptor positive breast cancer) 1.10E-05 23555315
3 139394153 rs16849309 Gene expression of NMNAT3 (probeID ILMN_1665123) in breast tumors 2.47E-04 22522925
3 63110198 rs17067751 Breast cancer 3.70E-04 21908515
3 11032829 rs1710873 Gene expression of SLC6A1 (probeID ILMN_1744191) in breast tumors 1.45E-19 22522925
3 151115204 rs17204508 Gene expression of P2RY12 (probeID ILMN_2320164) in breast tumors 6.70E-13 22522925
3 122493677 rs17212608 Breast size (bra cup size in women) 1.96E-05 22747683
3 63378419 rs17313993 Breast cancer 2.76E-09 20852631
3 128092102 rs1735538 Breast cancer total mortality 2.30E-05 22232737
3 128092102 rs1735538 Breast cancer (survival) 1.50E-04 22232737
3 152108562 rs17370519 Gene expression of MBNL1 (probeID ILMN_2313158) in breast tumors 5.40E-04 22522925
3 116690672 rs17718069 Breast size (bra cup size in women) 5.13E-05 22747683
3 47047500 rs181413143 Breast cancer 1.00E-04 23555315
3 62738425 rs186234 Breast size (bra cup size in women) 7.01E-06 22747683
3 169211767 rs1918964 Breast cancer risk (in BRCA1 mutation carriers) 3.76E-05 20852631
3 121557251 rs1920321 Gene expression of IQCB1 (probeID ILMN_2316104) in breast tumors 2.47E-12 22522925
3 183957291 rs199885492 Breast cancer 1.90E-04 23555315
3 12857896 rs200149446 Breast cancer 4.00E-05 23555315
3 58116540 rs200297468 Breast cancer 6.10E-05 23555315
3 62806494 rs2004224 Breast size (bra cup size in women) 2.53E-05 22747683
3 122497365 rs200992962 Breast size (bra cup size in women) 1.06E-05 22747683
3 111923150 rs201680751 Breast cancer (Estrogen receptor negative breast cancer) 8.70E-05 23555315
3 54600443 rs2030395 Gene expression of STAU1 (probeID ILMN_2327276) in breast tumors 5.05E-04 22522925
3 27292557 rs2034190 Breast cancer (early onset) 1.23E-11 24493630
3 122435750 rs2063515 Breast size (bra cup size in women) 6.69E-05 22747683
3 122435729 rs2063516 Breast size (bra cup size in women) 6.69E-05 22747683
3 38442490 rs2070488 Gene expression of TMEM2 (probeID ILMN_1784661) in breast tumors 8.04E-04 22522925
3 73024958 rs2087662 Gene expression of GLT8D4 (probeID ILMN_2085844) in breast tumors 4.34E-05 22522925
3 27273415 rs2100006 Breast cancer (early onset) 1.13E-11 24493630
3 11845285 rs2133133 Gene expression of C3ORF31 (probeID ILMN_1793724) in breast tumors 7.16E-21 22522925
3 42188424 rs2173335 Gene expression of TRAK1 (probeID ILMN_2399174) in breast tumors 1.28E-12 22522925
3 130943140 rs2176173 Breast size (bra cup size in women) 7.52E-07 22747683
3 187902932 rs2222103 Gene expression of FLJ42393 (probeID ILMN_1705921) in breast tumors 8.04E-27 22522925
3 50371432 rs2236947 Gene expression of HYAL3 (probeID ILMN_1667432) in breast tumors 4.29E-10 22522925
3 50004209 rs2252833 Gene expression of RBM6 (probeID ILMN_1738239) in breast tumors 1.04E-06 22522925
3 72422131 rs2272078 Gene expression of RYBP (probeID ILMN_1721842) in breast tumors 2.63E-09 22522925
3 40499273 rs2276871 Gene expression of RPL14 (probeID ILMN_2404850) in breast tumors 3.61E-295 22522925
3 5464641 rs2323142 Breast cancer early age of onset 1.23E-04 18463975
3 27260283 rs2370946 Breast cancer (early onset) 1.14E-10 24493630
3 11638637 rs2447616 Gene expression of CASQ2 (probeID ILMN_1722329) in breast tumors 6.55E-05 22522925
3 194705496 rs2676849 Breast size (bra cup size in women) 3.56E-05 22747683
3 194672254 rs2720951 Breast size (bra cup size in women) 4.98E-05 22747683
3 122612483 rs2840197 Breast size (bra cup size in women) 2.44E-05 22747683
3 148491096 rs2934115 Breast cancer 1.50E-04 21908515
3 62805378 rs2971926 Breast size (bra cup size in women) 5.14E-05 22747683
3 62733032 rs2971927 Breast size (bra cup size in women) 3.72E-06 22747683
3 11896347 rs303850 Breast cancer early age of onset (diagnosed before age 40) 5.20E-05 23319801
3 62757411 rs304190 Breast size (bra cup size in women) 3.32E-05 22747683
3 62756422 rs304192 Breast size (bra cup size in women) 3.32E-05 22747683
3 62797115 rs304226 Breast size (bra cup size in women) 7.46E-05 22747683
3 62800742 rs304229 Breast size (bra cup size in women) 6.57E-05 22747683
3 57220158 rs34504438 Gene expression of DNHD2 (probeID ILMN_1801341) in breast tumors 4.70E-04 22522925
3 52264907 rs352143 Gene expression of RIN1 (probeID ILMN_1660858) in breast tumors 1.55E-04 22522925
3 135932494 rs35320690 Gene expression of MSL2L1 (probeID ILMN_1766859) in breast tumors 1.91E-12 22522925
3 135932494 rs35320690 Breast size (bra cup size in women) 8.18E-05 22747683
3 135881488 rs35352346 Breast size (bra cup size in women) 5.84E-05 22747683
3 154045001 rs355768 Gene expression of DHX36 (probeID ILMN_1738272) in breast tumors 1.37E-14 22522925
3 154045001 rs355768 Gene expression of DHX36 (probeID ILMN_2100000) in breast tumors 6.58E-07 22522925
3 145842186 rs3762690 Gene expression of PLOD2 (probeID ILMN_1771599) in breast tumors 9.25E-06 22522925
3 105488572 rs3772513 Gene expression of CBLB (probeID ILMN_1685580) in breast tumors 9.98E-09 22522925
3 179039751 rs3806685 Breast cancer 2.40E-06 22452962
3 170585617 rs3821747 Gene expression of RPL22L1 (probeID ILMN_1797764) in breast tumors 6.84E-192 22522925
3 45587983 rs3821895 Gene expression of LARS2 (probeID ILMN_1700168) in breast tumors 2.49E-11 22522925
3 142532113 rs3844273 Breast cancer 5.30E-04 21908515
3 126247198 rs3856650 Gene expression of CHST13 (probeID ILMN_1734707) in breast tumors 2.08E-113 22522925
3 172835290 rs386535208 Breast cancer (Estrogen receptor positive breast cancer) 3.30E-05 23555315
3 179162316 rs386563678 Breast cancer 6.60E-05 23555315
3 125769757 rs4077563 Gene expression of SLC41A3 (probeID ILMN_2356111) in breast tumors 5.20E-08 22522925
3 125769757 rs4077563 Gene expression of SLC41A3 (probeID ILMN_1739885) in breast tumors 1.80E-05 22522925
3 41065413 rs409228 Musculoskeletal adverse events (MS-AEs) in women receiving AI adjuvant therapy for early breast cancer 5.44E-05 20876420
3 20042834 rs4103004 Gene expression of EFHB (probeID ILMN_1704617) in breast tumors 1.16E-35 22522925
3 20042834 rs4103004 Gene expression of EFHB (probeID ILMN_2199409) in breast tumors 7.96E-34 22522925
3 3240356 rs4109078 Breast cancer 3.80E-04 23555315
3 56967082 rs41320253 Gene expression of BAP1 (probeID ILMN_1768363) in breast tumors 3.31E-05 22522925
3 56967082 rs41320253 Gene expression of DCP1A (probeID ILMN_1809285) in breast tumors 1.25E-04 22522925
3 158299555 rs41357046 Breast size (bra cup size in women) 1.64E-05 22747683
3 100458996 rs41373752 Gene expression of TFG (probeID ILMN_2341815) in breast tumors 1.02E-175 22522925
3 178130407 rs417461 Gene expression of CFC1 (probeID ILMN_1668099) in breast tumors 7.19E-04 22522925
3 126950126 rs4234284 Adverse response to chemotherapy in breast cancer (alopecia) (docetaxel) 3.00E-06 24025145
3 16139112 rs4234534 Breast cancer 1.00E-05 19219042
3 9143321 rs434766 Gene expression of ARFGEF2 (probeID ILMN_1789990) in breast tumors 5.19E-04 22522925
3 49329090 rs4410472 Gene expression of USP4 (probeID ILMN_1798712) in breast tumors 6.50E-04 22522925
3 14598965 rs4449299 Alanine aminotransferase (ALT) elevation due to Lapatinib treatment of metastatic breast cancer 1.00E-04 21245432
3 11139579 rs4684758 Breast cancer early age of onset 3.90E-04 18463975
3 11819683 rs4684807 Gene expression of CDH24 (probeID ILMN_1660321) in breast tumors 6.68E-04 22522925
3 62739092 rs478123 Breast size (bra cup size in women) 4.40E-06 22747683
3 62735640 rs483513 Breast size (bra cup size in women) 4.49E-05 22747683
3 177364745 rs4857724 Gene expression of HS.581638 (probeID ILMN_1915499) in breast tumors 6.37E-09 22522925
3 9041094 rs487865 Breast cancer recurrence 3.30E-05 22232737
3 9041094 rs487865 Breast cancer total mortality 1.50E-04 22232737
3 9041094 rs487865 Breast cancer (survival) 7.00E-04 22232737
3 27330335 rs487930 Breast cancer (early onset) 5.04E-12 24493630
3 171833266 rs4894808 Gene expression of RBCK1 (probeID ILMN_1751330) in breast tumors 8.34E-04 22522925
3 128551234 rs4927919 Breast size (bra cup size in women) 6.36E-05 22747683
3 128551235 rs4927920 Breast size (bra cup size in women) 6.40E-05 22747683
3 49208865 rs4955420 Gene expression of WDR6 (probeID ILMN_1669484) in breast tumors 1.57E-06 22522925
3 27416013 rs4973768 Breast cancer 2.00E-30 23535729
3 27416013 rs4973768 Breast cancer 2.30E-30 23535729
3 27416013 rs4973768 Breast cancer 4.10E-23 19330027
3 27416013 rs4973768 Breast cancer 2.00E-08 21263130
3 27416013 rs4973768 Breast cancer 2.34E-08 21263130
3 27416013 rs4973768 Breast cancer 5.80E-07 20453838
3 27416013 rs4973768 Breast cancer 6.00E-07 20453838
3 27416013 rs4973768 Breast cancer 1.33E-04 20872241
3 62732491 rs499596 Breast size (bra cup size in women) 7.99E-06 22747683
3 118114690 rs500097 Gene expression of HS.555525 (probeID ILMN_1832430) in breast tumors 8.26E-04 22522925
3 62738577 rs504093 Breast size (bra cup size in women) 4.33E-06 22747683
3 62740993 rs506307 Breast size (bra cup size in women) 5.44E-05 22747683
3 62761029 rs517693 Breast size (bra cup size in women) 4.28E-05 22747683
3 62740905 rs529901 Breast size (bra cup size in women) 4.75E-06 22747683
3 27353716 rs552647 Breast cancer (early onset) 5.28E-12 24493630
3 122494764 rs55655344 Breast size (bra cup size in women) 1.11E-05 22747683
3 62579832 rs55920801 Breast size (bra cup size in women) 6.43E-05 22747683
3 128523503 rs56373544 Breast size (bra cup size in women) 5.01E-05 22747683
3 135932400 rs56398805 Breast size (bra cup size in women) 9.97E-05 22747683
3 62733726 rs576992 Breast size (bra cup size in women) 2.52E-05 22747683
3 62732799 rs580358 Breast size (bra cup size in women) 4.31E-06 22747683
3 62733366 rs580384 Breast size (bra cup size in women) 3.62E-06 22747683
3 62733366 rs580384 Breast size 4.00E-06 22747683
3 165985569 rs624641 Breast cancer 1.00E-05 22923054
3 165986370 rs638307 Breast cancer 1.40E-05 22923054
3 45037670 rs6441877 Gene expression of EXOSC7 (probeID ILMN_2055477) in breast tumors 9.18E-05 22522925
3 1171860 rs6442221 Breast cancer risk (in BRCA1 mutation carriers) 6.12E-06 20852631
3 27343644 rs653465 Breast cancer (early onset) 5.00E-12 24493630
3 29209151 rs6549915 Breast size 9.00E-06 22747683
3 29209151 rs6549915 Breast size (bra cup size in women) 9.15E-06 22747683
3 185331165 rs6762208 Gene expression of SENP2 (probeID ILMN_1801121) in breast tumors 1.85E-06 22522925
3 4742276 rs6762644 Breast cancer 2.00E-12 23535729
3 4742276 rs6762644 Breast cancer 2.20E-12 23535729
3 4742276 rs6762644 Breast cancer (invasive breast cancer) 1.20E-09 23535729
3 4742276 rs6762644 Breast cancer (Estrogen receptor positive breast cancer) 1.40E-08 23535729
3 152107148 rs6765523 Gene expression of MBNL1 (probeID ILMN_2313158) in breast tumors 1.97E-19 22522925
3 12690855 rs6766666 Gene expression of MKRN2 (probeID ILMN_2056760) in breast tumors 3.28E-14 22522925
3 24708874 rs6767967 Breast cancer 3.60E-04 19219042
3 135908178 rs6769762 Breast size (bra cup size in women) 7.26E-05 22747683
3 102157365 rs6784362 Breast cancer 2.10E-05 23555315
3 102157417 rs6784389 Breast cancer 1.90E-05 23555315
3 150467808 rs6788895 Breast cancer 9.00E-08 22951594
3 150467808 rs6788895 Breast cancer (hormonal receptor positive breast cancer) 9.43E-08 22951594
3 11847299 rs6790543 Gene expression of C3ORF31 (probeID ILMN_1793724) in breast tumors 4.61E-05 22522925
3 62747006 rs6791070 Breast size (bra cup size in women) 1.49E-05 22747683
3 67695020 rs6793868 Gene expression of HS.535718 (probeID ILMN_1839335) in breast tumors 7.76E-05 22522925
3 48237104 rs6796490 Gene expression of ZNF589 (probeID ILMN_1654612) in breast tumors 4.98E-06 22522925
3 7262014 rs6797852 Breast cancer 3.00E-06 23468962
3 52914143 rs6798472 Gene expression of TMEM110 (probeID ILMN_1705224) in breast tumors 5.73E-14 22522925
3 159644297 rs6799788 Breast cancer 1.40E-04 22923054
3 100427937 rs6810101 Gene expression of TFG (probeID ILMN_2341815) in breast tumors 1.50E-37 22522925
3 136047189 rs696081 Gene expression of PCCB (probeID ILMN_1761010) in breast tumors 7.78E-04 22522925
3 189645933 rs710521 Breast cancer 1.60E-04 23555315
3 193722330 rs724767 Plasma estradiol concentration in women with breast cancer 1.52E-06 23518928
3 193722330 rs724767 Estradiol plasma levels (breast cancer) 2.00E-06 23518928
3 122495272 rs72966399 Breast size (bra cup size in women) 1.59E-05 22747683
3 122509224 rs72968310 Breast size (bra cup size in women) 1.50E-05 22747683
3 63645410 rs73111385 Breast cancer (Estrogen receptor positive breast cancer) 1.60E-05 23555315
3 116659269 rs73147826 Breast size (bra cup size in women) 2.61E-05 22747683
3 116692337 rs73147847 Breast size (bra cup size in women) 5.19E-05 22747683
3 116728463 rs73155636 Breast size (bra cup size in women) 1.57E-05 22747683
3 128499195 rs7372263 Breast size (bra cup size in women) 6.56E-05 22747683
3 157081214 rs73873651 Breast cancer (Estrogen receptor positive breast cancer) 3.80E-04 23555315
3 183508714 rs74496163 Breast cancer 8.70E-05 23555315
3 122508041 rs75345006 Breast size (bra cup size in women) 1.95E-05 22747683
3 130945582 rs75523149 Breast size (bra cup size in women) 9.00E-07 22747683
3 122508275 rs76071278 Breast size (bra cup size in women) 1.50E-05 22747683
3 7300601 rs7610073 Breast cancer 7.40E-07 22923054
3 133543917 rs7626433 Gene expression of SRPRB (probeID ILMN_1751072) in breast tumors 2.43E-04 22522925
3 126980437 rs7627541 Breast cancer 9.40E-05 22923054
3 28828525 rs7633531 Breast cancer 1.00E-03 23555315
3 27241219 rs7634878 Breast cancer (early onset) 1.13E-09 24493630
3 168761670 rs7637164 Breast cancer 1.80E-05 20872241
3 189940916 rs7640718 Gene expression of PVRL3 (probeID ILMN_2188521) in breast tumors 4.00E-04 22522925
3 193417179 rs7644847 Gene expression of OPA1 (probeID ILMN_1729775) in breast tumors 3.85E-08 22522925
3 1170794 rs7646994 Breast cancer risk (in BRCA1 mutation carriers) 1.16E-04 20852631
3 119261375 rs7648642 Lobular breast cancer (menopausal hormone therapy interaction) 5.00E-06 24080446
3 31850158 rs7649250 Breast size (bra cup size in women) 4.46E-05 22747683
3 35536237 rs7650296 Breast cancer 5.20E-04 23555315
3 66441546 rs7653758 Gene expression of SLC25A26 (probeID ILMN_1750981) in breast tumors 7.98E-07 22522925
3 27217080 rs7653795 Breast cancer (early onset) 8.96E-11 24493630
3 138177764 rs774008 Gene expression of CEP70 (probeID ILMN_1741350) in breast tumors 7.74E-09 22522925
3 130940319 rs78624084 Breast size (bra cup size in women) 6.62E-06 22747683
3 183508590 rs79808533 Breast cancer 2.90E-04 23555315
3 117740707 rs817515 Breast cancer 1.90E-04 23555315
3 22994602 rs822789 Breast cancer risk (in BRCA1 mutation carriers) 6.70E-05 20852631
3 194684301 rs823008 Breast size (bra cup size in women) 5.12E-05 22747683
3 194693229 rs823028 Breast size (bra cup size in women) 8.54E-05 22747683
3 195479748 rs842225 Gene expression of LOC440993 (probeID ILMN_1765032) in breast tumors 1.68E-51 22522925
3 62808537 rs855099 Breast size (bra cup size in women) 6.04E-05 22747683
3 62744154 rs860592 Breast size (bra cup size in women) 9.72E-06 22747683
3 194698020 rs861092 Breast size (bra cup size in women) 5.20E-05 22747683
3 194685122 rs866077 Breast size (bra cup size in women) 5.32E-05 22747683
3 161389636 rs908351 Breast cancer (BRCA2-positive) 5.20E-04 21060860
3 174029342 rs9290498 Breast cancer 7.00E-05 19219042
3 77358965 rs9309766 Breast cancer total mortality 3.90E-04 22232737
3 191966701 rs940901 Breast cancer early age of onset 4.80E-04 18463975
3 18412358 rs9714119 Breast cancer total mortality 5.80E-04 22232737
3 149900326 rs9790045 Breast cancer 6.00E-05 22923054
3 29215421 rs9812380 Breast size (bra cup size in women) 2.29E-05 22747683
3 134218557 rs9814567 Gene expression of ANAPC13 (probeID ILMN_1793894) in breast tumors 8.93E-17 22522925
3 135939586 rs9818740 Breast size (bra cup size in women) 6.31E-05 22747683
3 29208163 rs9820385 Breast size (bra cup size in women) 1.89E-05 22747683
3 116694929 rs9822295 Breast size (bra cup size in women) 3.39E-05 22747683
3 44251270 rs9825080 Gene expression of ZNF502 (probeID ILMN_1655167) in breast tumors 2.69E-06 22522925
3 29215327 rs9829739 Breast size (bra cup size in women) 1.93E-05 22747683
3 48282494 rs9830016 Gene expression of ZNF589 (probeID ILMN_1654819) in breast tumors 4.12E-07 22522925
3 59635215 rs9831300 Breast cancer 1.50E-04 21908515
3 45036175 rs9835136 Gene expression of EXOSC7 (probeID ILMN_2055477) in breast tumors 1.26E-16 22522925
3 13299836 rs9835984 Breast cancer (hormonal receptor positive breast cancer) 6.24E-05 22951594
3 116695211 rs9842773 Breast size (bra cup size in women) 3.61E-05 22747683
3 121465220 rs9849087 Gene expression of GOLGB1 (probeID ILMN_1747935) in breast tumors 2.40E-84 22522925
3 58191917 rs9852460 Gene expression of FYCO1 (probeID ILMN_1709032) in breast tumors 7.43E-04 22522925
3 167722324 rs9860578 Gene expression of GOLPH4 (probeID ILMN_2186216) in breast tumors 2.58E-21 22522925
3 60978211 rs9862895 Gene expression of PHF11 (probeID ILMN_1776723) in breast tumors 8.11E-04 22522925
3 70037117 rs9863457 Breast cancer early age of onset 4.41E-04 18463975
3 88244349 rs9868977 Gene expression of ZNF654 (probeID ILMN_1721629) in breast tumors 2.66E-05 22522925
3 145795559 rs9874388 Gene expression of PLOD2 (probeID ILMN_2410924) in breast tumors 4.74E-20 22522925
3 115100216 rs9879234 Breast cancer (BRCA2-positive) 2.12E-04 21060860
3 125010064 rs987956 Gene expression of ZNF148 (probeID ILMN_2143822) in breast tumors 1.45E-06 22522925
3 49667691 rs9883000 Gene expression of GMPPB (probeID ILMN_1773645) in breast tumors 4.52E-05 22522925
3 67067946 rs9883895 Breast cancer (Estrogen receptor negative breast cancer) 4.43E-05 22976474
3 62802246 rs994203 Breast size (bra cup size in women) 3.00E-05 22747683
3 1165633 rs996424 Breast cancer risk (in BRCA1 mutation carriers) 1.51E-06 20852631
Chr Position SNPID Disease/Trait name pvalue PMID

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