| Bladder_GSE171351 |  |  | high-grade muscle invasive bladder cancer | 4 | human | GSE171351 | 4 | 4086 | Illumina NovaSeq 6000 | Primary | bladder | Gouin KH 3rd, et al. Nat Com...; 34385456 |
| Bone_GSE174313 | | | normal cranial suture | 4 | mouse | GSE174313 | 4 | 1670 | Illumina HiSeq 2000 | Normal | bone | Tower RJ, et al. Proc Natl A...; 34663698 |
| Brain_GSE147747 | | | normal adult mouse brain | 75 | mouse | GSE147747 | 3 | 34103 | Illumina NextSeq 500 | Normal | brain | Ortiz C, et al. Sci Adv 2020; 32637622 |
| Brain_GSE158450 | | | brain development | 1 | mouse | GSE158450 | 1 | 3024 | Illumina NovaSeq 6000 | Normal | brain | Joglekar A,et al. Nat Commun...; 33469025 |
| Brain_GSE165098 | | | neuroinflammatory | 6 | mouse | GSE165098 | 6 | 15658 | Illumina NovaSeq 6000 | Normal | brain | Hasel P,et al. Nat Neurosci ...; 34413515 |
| Brain_GSE182127 | | | heme-exposed brain | 7 | mouse | GSE182127 | 7 | 19066 | Illumina NovaSeq 6000 | Normal | brain | Akeret K,et al. Data Brief 2...; 35141374 |
| Brain_GSE185715 | | | normal mouse brain | 7 | mouse | GSE185715 | 3 | 18359 | NextSeq 2000 | Normal | brain | Gracia Villacampa E, et al. ...; 36776149 |
| Brain_PMID33420318 | | | brain tumor | 6 | human | - | 2 | 3631 | 10x Visium | Primary | brain | Kvastad L, et al. Commun Bio...; 33420318 |
| Brain_PMID35177622 | | | glioblastoma | 3 | human | - | 3 | 2251 | Spatial transcriptomics | Primary | brain | Ravi VM, et al. Nat Commun 2...; 35177622 |
| Brain_PMID35642896 | | | normal mouse brain | 1 | mouse | - | 1 | 2695 | 10x Visium | Normal | brain | Hou W, et al. Bioinformatics...; 35642896 |
| Brain_PMID36778332 | | | normal mouse brain | 1 | mouse | - | 1 | 3355 | 10x Visium | Normal | brain | Jones A, et al. bioRxiv 2023; 36778332 |
| Breast_GSE203612 | | | breast cancer | 3 | human | GSE203612 | 3 | 6593 | Illumina NextSeq 500 | Primary | breast | Barkley D, et al. Nature Gen...; 35931863 |
| Breast_PMID33420318 | | | breast cancer | 6 | human | - | 2 | 3035 | 10x Visium | Primary | breast | Kvastad L, et al. Commun Bio...; 33420318 |
| Breast_PMID34493872 | | | breast cancer | 6 | human | - | 6 | 15611 | 10x Visium | Primary | breast | Wu SZ, et al. Nat Genet 2021; 34493872 |
| Breast_PMID34650042 | | | breast cancer | 36 | human | - | 8 | 13620 | Spatial Transcriptomics v1.0 | Primary | breast | Andersson A, et al. Nat Comm...; 34650042 |
| Breast_PMID34845373 | | | breast cancer | 4 | human | - | 1 | 1031 | 10x Visium | Primary | breast | Bergenstrahle L, et al. Nat ...; 34845373 |
| Colon_GSE158328 | | | human intestinal development | 8 | human | GSE158328 | 5 | 9330 | Illumina NextSeq 500 | Normal | colon | Fawkner-Corbett D,et al. Cel...; 33406409 |
| Colon_GSE169749 | | | dextran sodium sulfate induced injury | 2 | mouse | GSE169749 | 2 | 6234 | Illumina NovaSeq 6000 | Primary | colon | Parigi SM,et al. Nat Commun ...; 35149721 |
| Colon_GSE190595 | | | dextran sodium sulfate induced injury | 2 | mouse | GSE190595 | 2 | 7481 | Illumina NovaSeq 6000 | Normal | colon | Parigi SM,et al. Nat Commun ...; 35149721 |
| Embryo_GSE160137 | | | mouse embryos development | 4 | mouse | GSE160137 | 4 | 790 | Illumina NovaSeq 6000 | Normal | embryos | Sanchez-Ferras O,et al. Nat ...; 33976190 |
| Endometrium_GSE203612 | | | endometrial carcinoma | 1 | human | GSE203612 | 1 | 1351 | Illumina NextSeq 500 | Primary | endometrium | Barkley D, et al. Nature Gen...; 35931863 |
| Gastric_GSE186290 | | | gastric cancer | 1 | mouse | GSE186290 | 1 | 2429 | Illumina HiSeq 2500 | Primary | gastric | Yamasaki J, et al. Cancer Sc...; 34931404 |
| Gastric_GSE203612 | | | gastric stromal tumor | 2 | human | GSE203612 | 2 | 5117 | Illumina NextSeq 500 | Primary | gastric | Barkley D, et al. Nature Gen...; 35931863 |
| Heart_PMID31835037 | | | developing heart in early pregnancy | 19 | human | - | 4 | 3111 | 10x Visium | Normal | heart | Asp M, et al. Cell 2019; 31835037 |
| Hippocampus_PMID33083725 | | | Alzheimers disease | 24 | mouse | - | 12 | 15062 | 10x Visium | Primary | hippocampus | Navarro JF, et al. iScience ...; 33083725 |
| Ileum_PMID34845373 | | | Colorectal Cancer | 4 | human | - | 1 | 13119 | 10x Visium | Primary | ileum | Bergenstrahle L, et al. Nat ...; 34845373 |
| Intestine_PMID36776149 | | | ovarian carcinosarcoma (Metastasis to omentum) | 4 | human | - | 1 | 16194 | 10x Visium | Metastatic | intestine | Gracia Villacampa E, et al. ...; 36776149 |
| Kidney_GSE171406_human | | | acute kidney injury | 1 | human | GSE171406 | 1 | 3007 | Illumina NovaSeq 6000 | Primary | kidney | Melo Ferreira R,et al. JCI I...; 34003797 |
| Kidney_GSE171406_mouse | | | acute kidney injury | 3 | mouse | GSE171406 | 1 | 5787 | Illumina NovaSeq 6000 | Primary | kidney | Melo Ferreira R,et al. JCI I...; 34003797 |
| Kidney_GSE182939 | | | acute kidney injury | 5 | mouse | GSE182939 | 2 | 9539 | Illumina NovaSeq 6000 | Primary | kidney | Dixon EE,et al. J Am Soc Nep...; 34853151 |
| Kidney_GSE185715 | | | kidney organoid | 3 | human | GSE185715 | 1 | 1357 | NextSeq 2000 | - | kidney | Gracia Villacampa E, et al. ...; 36776149 |
| Liver_GSE165141 | | | normal liver tissue | 12 | mouse | GSE165141 | 8 | 8641 | Illumina NextSeq 500 | Normal | liver | Hildebrandt F, et al. Nat Co...; 34857782 |
| Liver_GSE185477 | | | normal human liver caudate lobes | 1 | human | GSE185477 | 1 | 2265 | Illumina HiSeq 2500 | Normal | liver | Andrews TS, et al. Hepatol C...; 34792289 |
| Liver_GSE192741_human | | | macrophage development | 5 | human | GSE192741 | 4 | 6889 | Illumina NovaSeq 6000 | Normal | liver | Guilliams M,et al. Cell 2022; 35021063 |
| Liver_GSE192741_mouse | | | macrophage development | 10 | mouse | GSE192741 | 6 | 17290 | Illumina NovaSeq 6000 | Normal | liver | Guilliams M,et al. Cell 2022; 35021063 |
| Liver_GSE203612 | | | liver hepatocellular carcinoma | 1 | human | GSE203612 | 1 | 1661 | Illumina NextSeq 500 | Primary | liver | Barkley D, et al. Nature Gen...; 35931863 |
| Lung_GSE178361 | | | normal human lung | 2 | human | GSE178361 | 2 | 2220 | Illumina NovaSeq 6000 | Normal | lung | Kadur Lakshminarasimha Murth...; 35355018 |
| Lung_GSE185715 | | | lung organoid | 4 | human | GSE185715 | 1 | 1832 | NextSeq 2000 | - | lung | Gracia Villacampa E, et al. ...; 36776149 |
| Lung_GSE193460 | | | lung cancer | 4 | mouse | GSE193460 | 3 | 7627 | Illumina NovaSeq 6000 | Primary | lung | Dhainaut M,et al. Cell 2022; 35290801 |
| Lung_PMID36776149 | | | COVID-19 | 2 | human | - | 1 | 1514 | 10x Visium | Primary | lung | Gracia Villacampa E, et al. ...; 36776149 |
| Muscle_PMID36776149 | | | soft tissue carcinoma | 4 | human | - | 4 | 15154 | 10x Visium | Primary | muscle | Gracia Villacampa E, et al. ...; 36776149 |
| OFB_PMID33083725 | | | Alzheimers disease | 24 | mouse | - | 12 | 5059 | 10x Visium | Primary | olfactory bulb | Navarro JF, et al. iScience ...; 33083725 |
| OFB_PMID34845373 | | | mouse olfactory bulb | 12 | mouse | - | 1 | 3116 | Spatial Transcriptomics v1.0 | Normal | olfactory bulb | Bergenstrahle L, et al. Nat ...; 34845373 |
| Ovary_GSE203612 | | | ovarian cancer | 2 | human | GSE203612 | 2 | 3423 | Illumina NextSeq 500 | Primary | ovary | Barkley D, et al. Nature Gen...; 35931863 |
| Pancreas_GSE111672 | | | pancreatic Cancer | 10 | human | GSE111672 | 6 | 3285 | Illumina NextSeq 500 | Primary | pancreas | Moncada R, et al. Nat Biotec...; 31932730 |
| Pancreas_GSE203612 | | | pancreatic ductal adenocarcinoma | 1 | human | GSE203612 | 1 | 1789 | Illumina NextSeq 500 | Primary | pancreas | Barkley D, et al. Nature Gen...; 35931863 |
| Prostate_GSE230282 | | | Prostate cancer | 1 | human | GSE230282 | 1 | 4397 | DNBSEQ-G400 | Primary | prostate | Watanabe R, et al. Internati...; 37240308 |
| Prostate_PMID36778332 | | | Prostate cancer | 1 | human | - | 1 | 4371 | 10x Visium | Primary | prostate | Jones A, et al. bioRxiv 2023; 36778332 |
| Rheumatoidarthritis_PMID31831833 | | | rheumatoid arthritis | 9 | human | - | 3 | 3611 | NextSeq 500 | Primary | synovial | Carlberg K, et al. Sci Rep 2...; 31831833 |
| Skin_GSE144240 | | | squamous cell carcinoma | 12 | human | GSE144240 | 4 | 8671 | Illumina NextSeq 500 | Primary | skin | Andersson A, et al. Nat Comm...; 34650042 |
| Skin_GSE178758 | | | skin wounds tissue | 4 | mouse | GSE178758 | 1 | 4428 | Illumina NextSeq 500 | Primary | skin | Ma C, et al. Cell Systems 2022; 36265465 |
| Skin_PMID34845373 | | | squamous cell carcinoma | 4 | human | - | 1 | 10404 | 10x Visium | Primary | skin | Bergenstrahle L, et al. Nat ...; 34845373 |
| Spondyloarthritis_PMID31831833 | | | spondyloarthritis | 9 | human | - | 3 | 2628 | NextSeq 500 | Primary | synovial | Carlberg K, et al. Sci Rep 2...; 31831833 |