Detail (Experimental CeRNA)

Home Detail(Experimental CeRNA)

Basic Information

Regular Relationship :


Phenotype/DiseaseSpecie

Colorectal Cancer

CeRNA1

CASC15[LncRNA]

miRNA

miR-582-5p[miRNA]

CeRNA2

HMGB2[mRNA]


Tissue/Cell line

colorectal cancer cells

Specie

Homo sapiens (human)

Citation

J Gene Med. 2021 Jan 4:e3308. doi: 10.1002/jgm.3308.


Reference title
Tumor promoting long non-coding RNA CASC15 affects HMGB2 expression by sponging miR-582-5p in colorectal cancer.
Experimental verification
qRT-PCR;Luciferase activity assay;

Functional description
BACKGROUND: The importance of long non-coding RNAs (lncRNAs) in regulating tumorigenesis has been gradually recognized. Roles of lncRNA cancer susceptibility candidate 15 (CASC15) in cancers have been validated by several independent groups, however, its role in colorectal cancer (CRC) remains to be explored. METHODS: Levels of CASC15 in CRC cells and normal cells were measured with the qRT-PCR method. In vitro functional assays were performed to detect the effects of CASC15 on cell proliferation, invasion, and apoptosis. Bioinformatic analyses and luciferase activity assays were conducted to investigate the targets for CASC15. Animal experiments were conducted to analyze the effect of CASC15 on tumor growth in vivo. RESULTS: CASC15 level is revealed to be significantly elevated in CRC cells compared with normal cells. In vitro assays revealed that CASC15 overexpression stimulates cell growth and invasion, while its down-expression has opposite effects. Furthermore, CASC15 can bind with microRNA-582-5p (miR-582-5p) to modulate high mobility group box 2 (HMGB2) expression. We also showed that silencing of CASC15 inhibits tumor growth. CONCLUSIONS: In summary, CASC15 overexpression could promote CRC carcinogenesis, indicating knockdown of CASC15 might be a possible therapeutic measure to hinder carcinogenesis. This work could help us to understand the mechanisms behind CRC progression.

Annotations

External Annotation for CASC15
LncRNA-associated competing triplets and functions.
Comprehensive experimentally supported associations between lncRNA and human cancer.
Infer genomic variations that disturb lncRNA-associated ceRNA regulation..
Provide and annotate disease or phenotype-associated variants in human long non-coding RNAs (lncRNAs) and circular RNAs (circRNAs) or their regulatory elements.
Providing cellular-specific lncRNA-associated ceRNA networks predicted via high-throughput analysis of single-cell genomic data.
Information on all annotated and predicted human genes.
Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).
Genome browser for vertebrate genomes.
An annotated collection of all publicly available DNA sequences.
A wiki-based platform for community curation of human long non-coding RNAs.
An integrated knowledge database dedicated to non-coding RNAs.
An integrated database of human annotated lncRNA transcripts.
Comprehensive annotations of eukaryotic long non-coding RNAs.
Comprehensive experimentally supported associations between lncRNA and human cancer.
A comprehensive, authoritative compendium of human genes and genetic phenotypes.
The catalogue of somatic mutations in cancer.

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