Detail (Experimental CeRNA)

Home Detail(Experimental CeRNA)

Basic Information

Regular Relationship :


Phenotype/DiseaseSpecie

Colorectal Cancer

CeRNA1

PVT1[LncRNA]

miRNA

miR-152-3p[miRNA]

CeRNA2

E2F3[mRNA]


Tissue/Cell line

Colorectal Cancer Cells

Specie

Homo sapiens (human)

Citation

Cancer Sci. 2021 Aug 21. doi: 10.1111/cas.15113.


Reference title
lncRNA PVT1 promotes progression of colorectal cancer by sponging miR-152-3p and regulating E2F3/MAPK8 signaling.
Experimental verification
ChIP;FISH;qPCR;RNA pull-down assay;Western blot;FISH;luciferase assay;RNA pull-down;

Functional description
The purpose of this study was to investigate the pathogenesis of colorectal cancer (CRC) and the effects of the long non-coding RNA (lncRNA) plasmacytoma variant translocation 1 (PVT1) on CRC progression. Bioinformatics analysis verified PVT1 expression in tumor and normal tissues. qPCR and Western blotting were used to measure mRNA and protein levels, respectively. MTT, transwell, colony formation, and in vivo assays were used to assess the effects of PVT1 on proliferation, migration, and invasion by CRC cells. PVT1 and miR-152-3p were shown to be colocalized in CRC cells using FISH assay. The target genes of miR-152-3p were predicted and verified by bioinformatics analysis, luciferase assay and RNA pull-down assay. ChIP assay revealed that E2F3 binds with the promoter of MAPK8. PVT1 was overexpressed in CRC specimens, and its expression was higher in CRC cells than normal intestinal cells. PVT1 overexpression enhanced the proliferation, migration, and invasion of CRC cells, while PVT1 knockdown inhibited these processes. miR-152-3p was a target of PVT1, and E2F3 was a target of miR-152-3p. Rescue experiments confirmed the interaction between miR-152-3p and PVT1 and between miR-152-3p and E2F3. Luciferase and ChIP assay results confirmed that E2F3 modulates the transcriptional activation of MAPK8. PVT1 activated E2F3 signaling by sponging miR-152-3p. The PVT1/miR-152-3p/E2F3/MAPK8 axis promoted CRC progression.

Annotations

External Annotation for PVT1
LncRNA-associated competing triplets and functions.
Comprehensive experimentally supported associations between lncRNA and human cancer.
Infer genomic variations that disturb lncRNA-associated ceRNA regulation..
Provide and annotate disease or phenotype-associated variants in human long non-coding RNAs (lncRNAs) and circular RNAs (circRNAs) or their regulatory elements.
Providing cellular-specific lncRNA-associated ceRNA networks predicted via high-throughput analysis of single-cell genomic data.
Information on all annotated and predicted human genes.
Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).
Genome browser for vertebrate genomes.
An annotated collection of all publicly available DNA sequences.
A wiki-based platform for community curation of human long non-coding RNAs.
An integrated knowledge database dedicated to non-coding RNAs.
An integrated database of human annotated lncRNA transcripts.
Comprehensive annotations of eukaryotic long non-coding RNAs.
Comprehensive experimentally supported associations between lncRNA and human cancer.
A comprehensive, authoritative compendium of human genes and genetic phenotypes.
The catalogue of somatic mutations in cancer.

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