Detail (Experimental CeRNA)

Home Detail(Experimental CeRNA)

Basic Information

Regular Relationship :


Phenotype/DiseaseSpecie

Breast Cancer

CeRNA1

lincRNA-ROR[LncRNA]

miRNA

miR-205[miRNA]

CeRNA2

ZEB1[mRNA]


Tissue/Cell line

Mcf7, Bt474, Mda-Mb-435, Mda-Mb-231, Bt549 And Mda-Mb-436

Specie

Mus musculus (mouse)

Citation

Cell Death Dis 2014 Jun 12 5, e1287 doi:10.1038/cddis.2014.249 PMID:24922071


Reference title
LincRNA-ROR induces epithelial-to-mesenchymal transition and contributes to breast cancer tumorigenesis and metastasis
Experimental verification
Western blot;qRT-PCR;luciferase reporter assays

Functional description
we used a psiCHECK2 reporter plasmid to test the relationship between linc-ROR and miRNAs. We cloned the linc-ROR full-length transcript or ZEB2 3'-UTR (untranslated region) into the 3'-UTR of Renilla luciferase (Rluc) gene of psiCHECK2. The psiCHECK2 plasmid also contains a downstream constitutively expressed firefly luciferase gene as an internal control for normalization. We then showed that transient co-transfection of mir-205-5p mimics into HEK293T cells inhibited the Rluc activity in a dose-dependent manner , while the mir-34a-5p and let-7a-5p mimics had little influence on Rluc activity of psiCHECK2-ROR . To determine whether linc-ROR acts as a sponge to mir-205, we transfected psiCHECK2-ZEB2 into HEK293T cells together with the mir-205-5p mimics and increasing amounts of linc-ROR, and we detected that the Rluc activity increased in response to linc-ROR in a dose-dependent manner . Together, these results strongly point to a role of linc-ROR as a molecular sponge for mir-205, and presumably linc-ROR may regulate EMT program through preventing degradation of mir-205 targets (ZEB1 and ZEB2). This was in accordance with the ZEB1 and ZEB2 expression levels after linc-ROR/mir-205 overexpression or silencing. Our data also showed that several ZEB1/2-related miRNAs such as mir-205 and mir-200 family members were downregulated in linc-ROR-overexpressing cells. Thus, we conclude that lin-ROR functions as a molecular sponge for mir-205 to affect mir-205 targets in the process of EMT.

Annotations

External Annotation for lincRNA-ROR
LncRNA-associated competing triplets and functions.
Comprehensive experimentally supported associations between lncRNA and human cancer.
Infer genomic variations that disturb lncRNA-associated ceRNA regulation..
Provide and annotate disease or phenotype-associated variants in human long non-coding RNAs (lncRNAs) and circular RNAs (circRNAs) or their regulatory elements.
Providing cellular-specific lncRNA-associated ceRNA networks predicted via high-throughput analysis of single-cell genomic data.
Information on all annotated and predicted human genes.
Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).
Genome browser for vertebrate genomes.
An annotated collection of all publicly available DNA sequences.
A wiki-based platform for community curation of human long non-coding RNAs.
An integrated knowledge database dedicated to non-coding RNAs.
An integrated database of human annotated lncRNA transcripts.
Comprehensive annotations of eukaryotic long non-coding RNAs.
Comprehensive experimentally supported associations between lncRNA and human cancer.
A comprehensive, authoritative compendium of human genes and genetic phenotypes.
The catalogue of somatic mutations in cancer.

Starting a new search ...