Detail (Experimental CeRNA)

Home Detail(Experimental CeRNA)

Basic Information

Regular Relationship :


Phenotype/DiseaseSpecie

Melanoma

CeRNA1

FOXD3-AS1[LncRNA]

miRNA

miR-127-3p[miRNA]

CeRNA2

FJX1[mRNA]


Tissue/Cell line

Melanoma Cells

Specie

Homo sapiens (human)

Citation

Cancer Biother Radiopharm. 2020 Oct;35(8):596-604. doi: 10.1089/cbr.2019.3093. Epub 2020 Apr 30.


Reference title
FOXD3-AS1 Contributes to the Progression of Melanoma Via miR-127-3p/FJX1 Axis.
Experimental verification
qPCR;RT-qPCR;RNA immunoprecipitation;Western blot;RNA immunoprecipitation;Rescue assay;

Functional description
Background: Melanoma, belonging to a kind of skin cancer, takes a big part in cancer-associated deaths globally. Abundant documents have recorded the crucial roles of long noncoding RNA (lncRNA) in the initiation and development of tumors. lncRNA forkhead box D3 antisense RNA 1 (FOXD3-AS1) has been commonly identified as a key regulator in the progression of multiple cancers; however, the way it exerts function remains obscure in melanoma. Materials and Methods: FOXD3-AS1 expression was examined by RT-qPCR. The role of FOXD3-AS1 in melanoma was determined by 5-ethynyl-2'-deoxyuridine (EdU), transwell, and Western blot assays. The combination between microRNA-127-3p and FOXD3-AS1 (or four jointed box 1 [FJX1]) was confirmed by luciferase reporter and RNA immunoprecipitation assays. Results: FOXD3-AS1 was markedly upregulated in melanoma cells. It was validated by loss-of-function assays that cell proliferation and migration were inhibited by FOXD3-AS1 deficiency, while cell apoptosis was facilitated by FOXD3-AS1 knockdown in melanoma. Mechanistic exploration testified that miR-127-3p could bind to FOXD3-AS1 and its expression was negatively modulated by FOXD3-AS1 in melanoma. Besides, overexpression of miR-127-3p repressed melanoma progression. Moreover, miR-127-3p was certified to negatively regulate the expression of the FJX1, and miR-127-3p could combine with FJX1 in melanoma cells. Rescue assays depicted that FJX1 overexpression countervailed FOXD3-AS1 silencing-mediated inhibition on melanoma progression. Conclusions: Overall, FOXD3-AS1 contributes to the progression of melanoma via miR-127-3p/FJX1 axis.

Annotations

External Annotation for FOXD3-AS1
LncRNA-associated competing triplets and functions.
Comprehensive experimentally supported associations between lncRNA and human cancer.
Infer genomic variations that disturb lncRNA-associated ceRNA regulation..
Provide and annotate disease or phenotype-associated variants in human long non-coding RNAs (lncRNAs) and circular RNAs (circRNAs) or their regulatory elements.
Providing cellular-specific lncRNA-associated ceRNA networks predicted via high-throughput analysis of single-cell genomic data.
Information on all annotated and predicted human genes.
Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).
Genome browser for vertebrate genomes.
An annotated collection of all publicly available DNA sequences.
A wiki-based platform for community curation of human long non-coding RNAs.
An integrated knowledge database dedicated to non-coding RNAs.
An integrated database of human annotated lncRNA transcripts.
Comprehensive annotations of eukaryotic long non-coding RNAs.
Comprehensive experimentally supported associations between lncRNA and human cancer.
A comprehensive, authoritative compendium of human genes and genetic phenotypes.
The catalogue of somatic mutations in cancer.

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