Detail (Experimental CeRNA)

Home Detail(Experimental CeRNA)

Basic Information

Regular Relationship :


Phenotype/DiseaseSpecie

Ovarian Cancer

CeRNA1

HOST2[LncRNA]

miRNA

let-7b[miRNA]

CeRNA2

DICER[mRNA]


Tissue/Cell line

Ovcar3 Cell Line

Specie

Homo sapiens (human)

Citation

Hum Mol Genet 2015 Feb 1 24, 841-52 doi:10.1093/hmg/ddu502 PMID:25292198


Reference title
LncRNA-HOST2 regulates cell biological behaviors in epithelial ovarian cancer through a mechanism involving microRNA let-7b.
Experimental verification
qRT-PCR

Functional description
A luciferase reporter vector encoding 1500–2000 nt of the HOST2 sequence (harboring all of complementary positions of seven miRNAs, renamed pGL3-HOST2-wt) and a Renilla luciferase (Rluc) gene in the 3' UTR and a downstream, constitutively expressed firefly luciferase gene, which served as an internal control for normalization, were constructed. These vectors were then sequentially co-transfected with mimics of the above-mentioned, predicted miRNAs and a scramble mimic (as the control, renamed miCon) into OVCAR-3 cells (Aiferase activity of pGL3-HOST2-wt (WT), whereas little to no significant reduction in luciferase activity was observed when the cells were co-transfected with the other five predicted miRNAs. TThe data indicated that mutating the seed regions for let-7b and miR-1266 barely abrogated its luciferase activity. We also found that the inhibition effect of let-7b was more stable than that of miR-1266. Given that let-7 regulates target-gene expression by binding to imperfect complementary sequences in messenger RNAs (mRNAs), leading to translational repression and/or mRNA destabilization {(32)}, and because we knew nothing about miR-1266, we only focused on the regulatory role of let-7b for the HOST2 transcript in the further work. Meanwhile, the expression of let-7b was detected in the 30 OBT and 50 EOC tissue samples and was shown to be lower in EOC than in OBT (P < 0.01). After transfecting the let-7b mimic into OVCAR-3 cells, HOST2 expression was observed to be markedly down-regulated at the mRNA level when compared with that in cells transfected with miCon. These results indicated that let-7b repressed HOST2 expression in EOC, but the reason for let-7b expression being lower in EOC than in OBT was uncertain.When HOST2 was down-regulated, the expression of HMGA2, c-Myc, Dicer and Imp3 were also significantly reduced at the RNA and protein level, which was consistent with an increase in let-7b expression. Concomitantly, cell migration, invasion and proliferation were all inhibited, similar to what we have shown. Thus, the expression of the four targets were analyzed using reciprocal, HOST2 over-expressed experiments, where pcDNA3.0-HOST2 and a control empty vector (pcDNA3.0) were, respectively, transfected into HEK293 cells to increase the endogenous HOST2 level. Cells transfected with pcDNA3.0-HOST2 expressed HOST2 5-fold higher than cells transfection with pcDNA3.0. Significant increases of HMGA2, c-Myc, Dicer and Imp3 at the mRNA and protein levels in response to HOST2 over-expression were all observed. Together, these HOST2 loss- and gain-of-function studies suggest that ectopically expressed HOST2 sequesters endogenous let-7b and inhibits its functions, leading to derepression of the target genes of let-7b. To confirm that these effects were indeed due to down-regulated let-7b, we performed transfection experiments using ilet-7. As expected, increased mRNA as well as protein levels of HMGA2, c-Myc, Dicer and Imp3 were all observed in ilet-7-treated HEK293 cells when compared with iCon-treated cells.

Annotations

External Annotation for HOST2
LncRNA-associated competing triplets and functions.
Comprehensive experimentally supported associations between lncRNA and human cancer.
Infer genomic variations that disturb lncRNA-associated ceRNA regulation..
Provide and annotate disease or phenotype-associated variants in human long non-coding RNAs (lncRNAs) and circular RNAs (circRNAs) or their regulatory elements.
Providing cellular-specific lncRNA-associated ceRNA networks predicted via high-throughput analysis of single-cell genomic data.
Information on all annotated and predicted human genes.
Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).
Genome browser for vertebrate genomes.
An annotated collection of all publicly available DNA sequences.
A wiki-based platform for community curation of human long non-coding RNAs.
An integrated knowledge database dedicated to non-coding RNAs.
An integrated database of human annotated lncRNA transcripts.
Comprehensive annotations of eukaryotic long non-coding RNAs.
Comprehensive experimentally supported associations between lncRNA and human cancer.
A comprehensive, authoritative compendium of human genes and genetic phenotypes.
The catalogue of somatic mutations in cancer.

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