Detail (Experimental CeRNA)

Home Detail(Experimental CeRNA)

Basic Information

Regular Relationship :


Phenotype/DiseaseSpecie

Hepatocellular Carcinoma

CeRNA1

HBV[Viral RNA]

miRNA

miR-15a[miRNA]

CeRNA2

SMAD7[mRNA]


Tissue/Cell line

Liver Tissues

Specie

Hepatitis B virus (HBV)

Citation

J Virol 2015 Mar 89, 2739-49 doi:10.1128/jvi.02784-14 PMID:25540364


Reference title
HBV regulates apoptosis and tumorigenesis through miR15a-Smad7-TGF-B pathway
Experimental verification
Western blot;qRT-PCR;luciferase reporter assays

Functional description
We examined the protein level of Smad7 in miR-15a transfected cells. The immunoblotting data showed that the protein level of Smad7 was significantly reduced in miR-15a transfected cells data showed that miR-15a can reduce the relative luciferase activity of pGLO-Smad7 3’UTR but not pGLO-Smad7 3’UTR-mut we examined the amount of Smad7 mRNA in HBV-transgenic BALB/c mice by real-time PCR. The data showed that the relative amount of Smad7 mRNA in liver tissue of HBV-transgenic BALB/c mice was 2-fold higher than that in control mice (p<0.01). We next examined the correlation between miR-15a and Smad7 mRNA in liver tissue from HCC patients which were all chronic HBV carriers. There was negative correlation between miR-15a and Smad7 mRNA levels. We then analyzed the levels of Smad7 mRNA and HBV transcripts in liver tissue from the HCC patients by real-time PCR. miR-15a mimic enhances the activation of TGF-B luciferase reporter while miR-15a inhibitor inhibits the activation of TGF-B signaling. In conclusion, we demonstrate that HBV mRNAs act as ceRNAs of miR-15a and regulate TGF-B signaling in the development of HBV-related HCC.

Annotations

External Annotation for HBV
LncRNA-associated competing triplets and functions.
Comprehensive experimentally supported associations between lncRNA and human cancer.
Infer genomic variations that disturb lncRNA-associated ceRNA regulation..
Provide and annotate disease or phenotype-associated variants in human long non-coding RNAs (lncRNAs) and circular RNAs (circRNAs) or their regulatory elements.
Providing cellular-specific lncRNA-associated ceRNA networks predicted via high-throughput analysis of single-cell genomic data.
Information on all annotated and predicted human genes.
Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).
Genome browser for vertebrate genomes.
An annotated collection of all publicly available DNA sequences.
A wiki-based platform for community curation of human long non-coding RNAs.
An integrated knowledge database dedicated to non-coding RNAs.
An integrated database of human annotated lncRNA transcripts.
Comprehensive annotations of eukaryotic long non-coding RNAs.
Comprehensive experimentally supported associations between lncRNA and human cancer.
A comprehensive, authoritative compendium of human genes and genetic phenotypes.
The catalogue of somatic mutations in cancer.

Starting a new search ...