Detail (Experimental CeRNA)

Home Detail(Experimental CeRNA)

Basic Information

Regular Relationship :


Phenotype/DiseaseSpecie

Non-Small Cell Lung Cancer

CeRNA1

AEG-1[Coding-mRNA]

miRNA

miR-30a[miRNA]

CeRNA2

SNAIL[mRNA]


Tissue/Cell line

A549

Specie

Homo sapiens (human)

Citation

Eur J Cell Biol 2015 Jan 94, 22-31 doi:10.1016/j.ejcb.2014.10.006 PMID:25484183


Reference title
AEG-1 3'-untranslated region functions as a ceRNA in inducing epithelial-mesenchymal transition of human non-small cell lung cancer by regulating miR-30a activity.
Experimental verification
qRT-PCR

Functional description
Astrocyte Elevated Gene-1 (AEG-1), also known as metadherin (MTDH) and LYRIC/3D3. RT-PCR analyses were performed to examine the expres- sion of AEG-1 and hallmark EMT genes by using human-specific primers. Cell analysis of miR-30a mimics, inhibitor and negative control transfected cells were subjected to PCR analysis, Western blot and immunoblot analysis. AEG-1 protein expression in the same cells was inhibited by miR-30a. For ceRNA verification, HEK 293T cells were co-transfected with pMiR-Report/Snail, pMiR-Report/Mut-Snail, pMiR-Report/Vimentin, or pMiR-Report/Mut-Vimentin and AEG-1 mRNA 3' UTR vector (PAU)or control vector (PSI). The cells were lysed and luciferase activity was measured by luminometer 48 h afterwards. Overexpression of AEG-1 3' UTR increased the 3' UTR activity of luc-Snail and luc-Vimentin as assumed, due to less available common miRNAs. The protein level increased by western blot analysis in the AEG-1 3'UTR overexpression lung cancer A549 cells. Therefore, AEG-1 3'UTR as a ceRNA regulated the expression of Snail and Vimentin post-transcriptly based on the activity of miR-30a. we also used AEG-1 CDS overexpression plasmid (PA) to increase the protein expression of AEG-1, and determine the expression of Vimentin and Snail by western blot analysis. It was suggested the regulation effect of AEG-1 on the expression of Snail was not only at RNA level but also protein level.

Annotations

External Annotation for AEG-1
LncRNA-associated competing triplets and functions.
Comprehensive experimentally supported associations between lncRNA and human cancer.
Infer genomic variations that disturb lncRNA-associated ceRNA regulation..
Provide and annotate disease or phenotype-associated variants in human long non-coding RNAs (lncRNAs) and circular RNAs (circRNAs) or their regulatory elements.
Providing cellular-specific lncRNA-associated ceRNA networks predicted via high-throughput analysis of single-cell genomic data.
Information on all annotated and predicted human genes.
Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).
Genome browser for vertebrate genomes.
An annotated collection of all publicly available DNA sequences.
A wiki-based platform for community curation of human long non-coding RNAs.
An integrated knowledge database dedicated to non-coding RNAs.
An integrated database of human annotated lncRNA transcripts.
Comprehensive annotations of eukaryotic long non-coding RNAs.
Comprehensive experimentally supported associations between lncRNA and human cancer.
A comprehensive, authoritative compendium of human genes and genetic phenotypes.
The catalogue of somatic mutations in cancer.

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