Detail (Experimental CeRNA)

Home Detail(Experimental CeRNA)

Basic Information

Regular Relationship :


Phenotype/DiseaseSpecie

Stem Cell Self-Renewal

CeRNA1

lincRNA-ROR[LncRNA]

miRNA

miR-145[miRNA]

CeRNA2

OCT4[mRNA]


Tissue/Cell line

Embryonic Stem Cell

Specie

Homo sapiens (human)

Citation

Dev Cell 2013 Apr 15 25, 69-80 doi:10.1016/j.devcel.2013.03.002 PMID:23541921


Reference title
Endogenous miRNA sponge lincRNA-ROR regulates Oct4, Nanog, and Sox2 in human embryonic stem cell self-renewal
Experimental verification
Luciferase reporter assay

Functional description
We demonstrate that a lincRNA, linc-RoR, may function as a key competing endogenous RNA to link the network of miRNAs and core TFs, e.g., Oct4, Sox2, and Nanog. We engineered linc-RoR-overexpressing plasmids that have either wild-type (WT) or mutant (Mut) transcripts with mutations in the two miR-145-binding sites. We found that the ectopically expressed linc-RoR WT reduced the concentration of miR-145 during the cotransfection of the linc-RoR expression vector and low concentration of miRNA mimics in HEK293 cells. We also found that linc-RoR expression levels were decreased after transfection of miR-145 mimics, which indicated that both miR-145 and linc-RoR were cleaved and degraded during this process. These data suggest that linc-RoR functions as an miRNA sponge to reduce the efficient concentration of miR-145. In addition, OCT4 and NANOG mRNA was rescued at up to 80% of the levels in wild-type hESCs after miR-145 inhibitor transfection.

Annotations

External Annotation for lincRNA-ROR
LncRNA-associated competing triplets and functions.
Comprehensive experimentally supported associations between lncRNA and human cancer.
Infer genomic variations that disturb lncRNA-associated ceRNA regulation..
Provide and annotate disease or phenotype-associated variants in human long non-coding RNAs (lncRNAs) and circular RNAs (circRNAs) or their regulatory elements.
Providing cellular-specific lncRNA-associated ceRNA networks predicted via high-throughput analysis of single-cell genomic data.
Information on all annotated and predicted human genes.
Gene nomenclature, gene families and associated resources (genomic, proteomic, phenotypic information).
Genome browser for vertebrate genomes.
An annotated collection of all publicly available DNA sequences.
A wiki-based platform for community curation of human long non-coding RNAs.
An integrated knowledge database dedicated to non-coding RNAs.
An integrated database of human annotated lncRNA transcripts.
Comprehensive annotations of eukaryotic long non-coding RNAs.
Comprehensive experimentally supported associations between lncRNA and human cancer.
A comprehensive, authoritative compendium of human genes and genetic phenotypes.
The catalogue of somatic mutations in cancer.

Starting a new search ...