Cancer type

Experimentally supported BLCA-related lncRNAs used as seeds in CLING.

Ensembl ID Gene Symbol Validation methods Reference
ENSG00000130600H19qPCR, Western blot, Luciferase reporter assays, RNAi etc. 26198047
ENSG00000163597SNHG16qPCR etc.21147498
ENSG00000214049UCA1qPCR, Western blot, RNAi, in vitro knockdown, RIP etc.24993775
ENSG00000214548MEG3qPCR, Western blot etc.23295831
ENSG00000215458AATBCmicroarray, qPCR, RNAi, in vitro knockdown etc.25473900
ENSG00000224328MDC1-AS1microarray, qPCR etc.25514464
ENSG00000225670CTA-134P22microarray, qPCR, RNAi etc.24944692
ENSG00000228630HOTAIRqPCR, Western blot, Northern blot etc.26469956
ENSG00000234741GAS5qPCR, Western blot, RNAi, RIP etc.24069260
ENSG00000238057ZEB2-AS1qPCR etc.26152796
ENSG00000240498CDKN2B-AS1qPCR, Western blot etc.26449463
ENSG00000249082CTC-276P9microarray, qPCR, RNAi etc.24944692
ENSG00000249859PVT1qPCR, RNAi, Flow cytometry assay etc.26517688
ENSG00000251562MALAT1qPCR, Western blot, Luciferase reporter assay, RNAi, RIP etc.24449823
ENSG00000253352TUG1qPCR, Western blot, Luciferase reporter assay, RNAi, RIP etc.26318860
ENSG00000253438PCAT1qPCR etc.25934337
ENSG00000258667HIF1A-AS2qPCR etc.27018306
ENSG00000224189HOXD-AS1qPCR, RNAi, cell proliferation assay ect.27328915

Experimentally supported BRCA-related lncRNAs used as seeds in CLING.

Ensembl ID Gene Symbol Validation methods Reference
ENSG00000130600H19qPCR, Western blot, RNAi etc.25846769
ENSG00000171889MIR31HGqPCR, Western blot, RNAi etc.24631686
ENSG00000177410ZFAS1microarray, Northern blot, ISH etc.21460236
ENSG00000214049UCA1microarray, qPCR, Western blot, RNAi, Luciferase reporter assay, RIP etc.24457952
ENSG00000214548MEG3qPCR, ISH etc.14602737
ENSG00000228630HOTAIRmicroarray, qPCR, ISH etc.23133536
ENSG00000229299RP4-583P15microarray, qPCR etc.25661361
ENSG00000229807XISTqPCR, RNAi, IHC, ISH ect.27248326
ENSG00000234741GAS5qPCR, RNAi etc.24789445
ENSG00000235123DSCAM-AS1qPCR, Northern blot, ISH etc.12177779
ENSG00000235947EGOTqPCR etc.26159853
ENSG00000236824BCYRN1qPCR, ChIP ect.27277684
ENSG00000240498CDKN2B-AS1qPCR etc.17440112
ENSG00000242385LINC00901qPCR etc.25435812
ENSG00000242808SOX2-OTqPCR, Western blot etc.25006803
ENSG00000244558RP11-445H22qPCR etc.25929808
ENSG00000245532NEAT1qPCR, RNAi etc27147820
ENSG00000247844CCAT1qPCR etc.26464701
ENSG00000249859PVT1qPCR etc.17908964
ENSG00000250366LINC00617qPCR, Western blot, Luciferase reporter assays, RNA Pull-Down Assay, RPI etc.26207516
ENSG00000251562MALAT1qPCR, Western blot, Luciferase reporter assays, RIP etc.26676637
ENSG00000260455CASC14microarray, qPCR, Western blot, RIP, ChIP etc.26378045
ENSG00000262117BCAR4microarray, qPCR, RNAi etc.22892392
ENSG00000269821KCNQ1OT1RNA CISH etc.26323944
ENSG00000258609LINC-RORmicroarray, qPCR, Western blot etc.25253741
ENSG00000228288PCAT6qPCR, RNAi ect.27322459

Experimentally supported COAD-related lncRNAs used as seeds in CLING.

Ensembl ID Gene Symbol Validation methods Reference
ENSG00000130600H19qPCR, Western blot, RNAi etc.24840737
ENSG00000163597SNHG16qPCR, RNAi etc.24519959
ENSG00000171889MIR31HGqPCR, Western blot, RNAi, IHC, Luciferase reporter assay etc.26362196
ENSG00000177410ZFAS1qPCR, RNAi, Western blot, Northern blot, RIP, RNA pull-down assay etc.26506418
ENSG00000214049UCA1microarray, qPCR, Luciferase reporter assay, RNAi etc.26238511
ENSG00000214548MEG3qPCR, Western blot, FCA etc.25636452
ENSG00000224081LINC01057microarray, qPCR etc.26328256
ENSG00000226950DANCRqPCR etc.26617879
ENSG00000227115RP11-267C16qPCR etc.26429648
ENSG00000228630HOTAIRqPCR, Western blot, RNAi etc.26549670
ENSG00000229807XISTmicroarray, FISH etc.17143621
ENSG00000230590FTXqPCR, RNAi etc26629053
ENSG00000231721MKLN1-AS1microarray, qPCR, RIP etc.24070194
ENSG00000234492RPL34-AS1microarray, qPCR etc.24908062
ENSG00000234741GAS5qPCR, FCA etc.25326054
ENSG00000243197TUSC7qPCR etc.23680400
ENSG00000243766HOTTIPqPCR, Western blot, RNAi etc.26678886
ENSG00000245532NEAT1qPCR etc.26314847
ENSG00000245694CRNDEmicroarray, qPCR, RNAi etc.24184209
ENSG00000247844CCAT1qPCR, Western blot, Luciferase reporter assay etc.26825578
ENSG00000249859PVT1microarray, qPCR, Western blot, RNAi etc.24196785
ENSG00000250302RP11-752D24microarray, qPCR etc.26328256
ENSG00000250337LINC01021RNA-seq, pSILAC, qPCR, Western Blot, Luciferase reporter assay etc.26183718
ENSG00000251164HULCqPCR etc.19445043
ENSG00000251562MALAT1microarray, qPCR, Western blot etc.25446987
ENSG00000253438PCAT1qPCR etc.23640607
ENSG00000258609LINC-RORqPCR, Western blot, RNAi etc.26169368
ENSG00000269821KCNQ1OT1qPCR, FISH etc.16965397
ENSG00000270419CAHMqPCR, qMSP etc.24799664
ENSG00000228705LINC00659microarray, qPCR, Luciferase reporter assay etc.25663692
ENSG00000242687AC004893microarray, qPCR etc.25921151
ENSG00000244649CTD-2377D24microarray, qPCR etc.25921151
ENSG00000256039RP11-291B21microarray, qPCR etc.25921151
ENSG00000256288RP11-277P12microarray, qPCR etc.25921151

Experimentally supported HNSC-related lncRNAs used as seeds in CLING.

Ensembl ID Gene Symbol Validation methods Reference
ENSG00000130600H19qPCR, Western blot, Luciferase reporter assay etc.26872375
ENSG00000214049UCA1qPCR etc.24332332
ENSG00000214548MEG3microarray, MSP, Western blot, RNAi etc.24343426
ENSG00000228630HOTAIRqPCR, Western blot, Flow cytometry assay etc.26592246
ENSG00000234235BOK-AS1qPCR, Western blot, RIP etc.25749038
ENSG00000236824BCYRN1qPCR etc.27143917
ENSG00000236830CBR3-AS1qPCR, RNAi etc.24337686
ENSG00000237036ZEB1-AS1qPCR etc.26617942
ENSG00000237697LINC00312qPCR, Western blot, Luciferase reporter assay, ISH etc.19591174
ENSG00000240498CDKN2B-AS1qPCR etc.25257554
ENSG00000241388HNF1A-AS1microarray, RNA-seq, qPCR, Western bolt, RNAi etc.24000294
ENSG00000242808SOX2-OTqPCR, RNAi etc.24105929
ENSG00000243197TUSC7qPCR, RNAi etc25169763
ENSG00000243766HOTTIPqPCR etc.26058875
ENSG00000245532NEAT1qPCR, Western blot, Luciferase reporter assay etc.26822763
ENSG00000249082CTC-276P9microarray, qPCR etc.26158411
ENSG00000249395CASC9microarray, qPCR etc.24222893
ENSG00000249859PVT1qPCR, Western blot, RIP, ChIP etc.26427660
ENSG00000251164HULCmicroarray, qPCR etc.25997963
ENSG00000251562MALAT1qPCR etc.25257554
ENSG00000253352TUG1qPCR, RNAi, FCA etc.25366138
ENSG00000253438PCAT1qPCR etc.25731728
ENSG00000259104PTCSC3microarray, qPCR, Western blot etc.26274343
ENSG00000227467RP11-169D4microarray, qPCR etc.25243407
ENSG00000229891Z83851microarray, qPCR etc.24822202
ENSG00000233901RP11-65J3microarray, qPCR etc.25045670
ENSG00000234380AP000330qPCR, Luciferase reporter assay, Western blot etc.25486427
ENSG00000236130RP11-23B15microarray, qPCR, Western blot etc.26274343
ENSG00000269364CTC-457E21microarray, qPCR etc.24522499
ENSG00000237396RP4-788L20microarray, qPCR etc.26003293
ENSG00000249550RP11-438N16microarray, qPCR etc.24522499

Experimentally supported LUAD-related lncRNAs used as seeds in CLING.

Ensembl ID Gene Symbol Validation methods Reference
ENSG00000130600H19qPCR etc.16707459
ENSG00000180139ACTA2-AS1microarray, qPCR, RNAi etc.24721325
ENSG00000182165TP53TG1microarray, qPCR, Western bolt, RNAi etc.23741487
ENSG00000214049UCA1qPCR, Western blot, RNAi etc.26160838
ENSG00000214548MEG3microarray, qPCR, Western blot etc.25992654
ENSG00000224648RP11-397D12microarray, qPCR etc.26393913
ENSG00000225450RP3-508I15microarray, qPCR, Western bolt, RNAi etc.23741487
ENSG00000227372TP73-AS1microarray, qPCR etc.25590602
ENSG00000228172RP1-317E23microarray, qPCR etc.25394782
ENSG00000228630HOTAIRqPCR, Western blot, RNAi etc.24155936
ENSG00000228692RP5-826L7microarray, qPCR etc.25089627
ENSG00000229807XISTqPCR etc.26339353
ENSG00000231621AC013264microarray, qPCR etc.25394782
ENSG00000231764DLX6-AS1microarray, qPCR, Western blot etc.26052251
ENSG00000231814LINC00210microarray, qPCR, Western bolt, RNAi etc.23741487
ENSG00000232688AC007403microarray, qPCR etc.26393913
ENSG00000233256RP11-445K13microarray, qPCR etc.25089627
ENSG00000233695GAS6-AS10
ENSG00000234741GAS5qPCR, Western blot, Luciferase reporter assay ect.27338051
ENSG00000235590GNAS-AS1microarray, qPCR etc.25394782
ENSG00000236272Z82214microarray, qPCR etc.25394782
ENSG00000236824BCYRN1ISH, Northern hybridization etc.9422992
ENSG00000237232ZNF295-AS1microarray, qPCR etc.25089627
ENSG00000237248LINC00987microarray, qPCR etc.25089627
ENSG00000237647ERICH1-AS1microarray, qPCR etc.26393913
ENSG00000237697LINC00312microarray, qPCR etc.25590602
ENSG00000237978RP11-385J1microarray, qPCR etc.25394782
ENSG00000240498CDKN2B-AS1qPCR, Western blot etc.25504755
ENSG00000241388HNF1A-AS1qPCR, Western blot, RNAi, RIP etc.25863539
ENSG00000241684ADAMTS9-AS2microarray, qPCR etc.25590602
ENSG00000245146LINC01024qPCR, Western blot, RNAi etc.26337085
ENSG00000245532NEAT1qPCR, Western blot, RNAi, RNA pull down assay etc.27351135
ENSG00000246016RP11-1C1microarray, qPCR etc.25089627
ENSG00000246763RGMB-AS1microarray, qPCR, Western blot etc.26950071
ENSG00000247844CCAT1qPCR, Western blot, RNAi etc.25129441
ENSG00000248323LUCAT1qPCR, Western bolt, RIP etc.23672216
ENSG00000249859PVT1qPCR, Western blot, RNAi etc.26493997
ENSG00000250584RP11-325I22microarray, qPCR etc.25085781
ENSG00000251085RP11-893F2microarray, qPCR etc.25089627
ENSG00000251562MALAT1qPCR, Western blot, RIP, Luciferase reporter assay ect.27294002
ENSG00000253222NRG1-IT2qPCR etc.22665269
ENSG00000253352TUG1qPCR, Western blot, Luciferase reporter assay, RNAi etc.24853421
ENSG00000254338RP11-909N17microarray, qPCR etc.25089627
ENSG00000258777HIF1A-AS1qPCR etc.26339353
ENSG00000259925CTA-363E6microarray, qPCR etc.25089627
ENSG00000259974LINC00261microarray, qPCR etc.25590602
ENSG00000261496RP13-514E23microarray, qPCR etc.25089627
ENSG00000263011RP11-473M20microarray, qPCR etc.25089627
ENSG00000196634RP3-337D23microarray, qPCR, Western blot, RNAi, RIP, FCA etc.26291312
ENSG00000230176RP4-779E11microarray, qPCR, Western blot, RNAi etc.25820656
ENSG00000238120CTA-941F9microarray, qPCR, Western bolt, RNAi etc.23741487
ENSG00000248771RP11-294O2qPCR, Western blot, RNAi, RIP, ChIP etc. 26693067
ENSG00000255717SNHG1qPCR, RNAi etc.25818744
ENSG00000265962RP11-674N23qPCR etc.25674259
ENSG00000236914RP11-1008C21microarray, qPCR etc.25758555
nullnullnull

Experimentally supported LUSC-related lncRNAs used as seeds in CLING.

Ensembl ID Gene Symbol Validation methods Reference
ENSG00000130600H19qPCR etc.16707459
ENSG00000182165TP53TG1microarray, qPCR, Western bolt, RNAi etc.23741487
ENSG00000214049UCA1qPCR, Western blot, RNAi etc.26160838
ENSG00000214548MEG3microarray, qPCR, Western blot etc.25992654
ENSG00000224648RP11-397D12microarray, qPCR etc.26393913
ENSG00000225450RP3-508I15microarray, qPCR, Western bolt, RNAi etc.23741487
ENSG00000227372TP73-AS1microarray, qPCR etc.25590602
ENSG00000228172RP1-317E23microarray, qPCR etc.25394782
ENSG00000228630HOTAIRqPCR, Western blot, RNAi etc.24155936
ENSG00000229807XISTqPCR etc.26339353
ENSG00000231621AC013264microarray, qPCR etc.25394782
ENSG00000231814LINC00210microarray, qPCR, Western bolt, RNAi etc.23741487
ENSG00000232688AC007403microarray, qPCR etc.26393913
ENSG00000233695GAS6-AS10
ENSG00000234741GAS5qPCR, Western blot, Luciferase reporter assay ect.27338051
ENSG00000235590GNAS-AS1microarray, qPCR etc.25394782
ENSG00000236272Z82214microarray, qPCR etc.25394782
ENSG00000236824BCYRN1ISH, Northern hybridization etc.9422992
"ENSG00000204623"ZNRD1-AS10
ENSG00000237647ERICH1-AS1microarray, qPCR etc.26393913
ENSG00000237697LINC00312microarray, qPCR etc.25590602
ENSG00000237978RP11-385J1microarray, qPCR etc.25394782
ENSG00000240498CDKN2B-AS1qPCR, Western blot etc.25504755
ENSG00000241684ADAMTS9-AS2microarray, qPCR etc.25590602
ENSG00000242808SOX2-OTqPCR, Western blot, RNAi, RIP etc.24927902
ENSG00000245146LINC01024qPCR, Western blot, RNAi etc.26337085
ENSG00000245532NEAT1qPCR, Western blot, RNAi, RNA pull down assay etc.27351135
ENSG00000246763RGMB-AS1microarray, qPCR, Western blot etc.26055877
ENSG00000247844CCAT1qPCR, Western blot, RNAi etc.25129441
ENSG00000248323LUCAT1qPCR, Western bolt, RIP etc.23672216
ENSG00000249859PVT1qPCR, Western blot, RNAi etc.26493997
ENSG00000251562MALAT1qPCR, Western blot, RNAi, Dual-luciferase assay etc.25773124
ENSG00000253222NRG1-IT2qPCR etc.22665269
ENSG00000253352TUG1qPCR, Western blot, Luciferase reporter assay, RNAi etc.24853421
ENSG00000254338RP11-909N17microarray, qPCR etc.25394782
ENSG00000258777HIF1A-AS1qPCR etc.26339353
ENSG00000259974LINC00261microarray, qPCR etc.25590602
ENSG00000224259RP11-48O20microarray, qPCR, RNAi etc.25908174
ENSG00000230176RP4-779E11microarray, qPCR, Western blot, RNAi etc.25820656
ENSG00000238120CTA-941F9microarray, qPCR, Western bolt, RNAi etc.23741487
ENSG00000255717SNHG1qPCR, RNAi etc.25818744
ENSG00000265962RP11-674N23qPCR etc.25674259
ENSG00000236914RP11-1008C21qPCR, Western blot, Flow cytometry assay etc.26883250

Experimentally supported OV-related lncRNAs used as seeds in CLING.

Ensembl ID Gene Symbol Validation methods Reference
ENSG00000130600H19microarray, qPCR, Western blot etc.25205099
ENSG00000214049UCA1microarray, qPCR etc.24379988
ENSG00000214548MEG3qPCR, MSP, Western blot, Luciferase reporter assay etc.24859196
ENSG00000228630HOTAIRqPCR, Western blot, RNAi etc.25792974
ENSG00000229807XISTmicroarray, qPCR etc.17143508
ENSG00000234741GAS5microarray, qPCR, RNAi etc.26503132
ENSG00000236824BCYRN1qPCR, RNAi etc26893717
ENSG00000240498CDKN2B-AS1qPCR, Western blot etc.27095571
ENSG00000240990HOXA11-ASqPCR, Western blot etc.26430965
ENSG00000247844CCAT1microarray, qPCR etc.24379988
ENSG00000249628LINC00942microarray, qPCR etc.24379988
ENSG00000249859PVT1qPCR, Western blot etc.26884974
ENSG00000251562MALAT1microarray, qPCR, in vitro knockdown etc.27313681
ENSG00000261373VPS9D1-AS1microarray, qPCR etc.24379988
ENSG00000230630DNM3OSqPCR etc.20400975
ENSG00000236719RP11-522D2RNA-seq, qPCR etc.24265805

Experimentally supported PRAD-related lncRNAs used as seeds in CLING.

Ensembl ID Gene Symbol Validation methods Reference
ENSG00000130600H19qPCR, Western blot etc.24988946
ENSG00000204054LINC00963microarray, qPCR, RNAi, Western blot etc.24691949
ENSG00000205861C1QTNF9B-AS1qPCR, Northern blot etc.15930275
ENSG00000214049UCA1microarray, RNA-seq, qPCR, Northern bolt, RNAi etc.23728290
ENSG00000214548MEG3qPCR, Western blot, RNAi, Flow cytometry assay etc.26610246
ENSG00000225937PCA3RNA-seq, qPCR etc.22349460
ENSG00000226950DANCRqPCR, Western blot, RNAi, ChIP ect.27191265
ENSG00000227418PCGEM1microarray, RNA-seq, qPCR, Northern bolt, RNAi etc.23728290
ENSG00000228288PCAT6microarray, RNA-seq, qPCR, Northern bolt, RNAi etc.23728290
ENSG00000228630HOTAIRqPCR, RNA Pull-Down Assay, RIP, ChIP etc.26411689
ENSG00000231806PCAT7microarray, RNA-seq, qPCR, Northern bolt, RNAi etc.23728290
ENSG00000234741GAS5qPCR, RNAi etc.23676682
ENSG00000235947EGOTmicroarray, RNA-seq, qPCR, Northern bolt, RNAi etc.23728290
ENSG00000236830CBR3-AS1qPCR, Western blot etc.22264502
ENSG00000240498CDKN2B-AS1qPCR etc.20541999
ENSG00000243766HOTTIPmicroarray, RNA-seq, qPCR, Northern bolt, RNAi etc.23728290
ENSG00000245532NEAT1microarray, RNA-seq, qPCR, Northern bolt, RNAi etc.23728290
ENSG00000249859PVT1qPCR, ChIP etc.21814516
ENSG00000251164HULCmicroarray, RNA-seq, qPCR, Northern bolt, RNAi etc.23728290
ENSG00000251562MALAT1qPCR, RIP-Seq, RNAi, ChIP etc.26516927
ENSG00000253438PCAT1RNA-seq, qPCR, Western blot etc.21804560
ENSG00000269821KCNQ1OT1microarray, RNA-seq, qPCR, Northern bolt, RNAi etc.23728290
ENSG00000230061AP001065microarray, qPCR, RNAi etc.24931166
ENSG00000235899RP11-345L23microarray, qPCR, RNAi etc.25513185
ENSG00000245750RP11-279F6qPCR, Western blot etc.25700553
ENSG00000259641RP11-279F6microarray, qPCR etc.25030374
ENSG00000265369U3microarray, qPCR, RNAi etc.24519926

Experimentally supported STAD-related lncRNAs used as seeds in CLING.

Ensembl ID Gene Symbol Validation methods Reference
ENSG00000130600H19qPCR, Western blot, RNAi etc.24388988
ENSG00000177133LINC00982microarray, qPCR, Western blot, RNAi, FCA etc.26334618
ENSG00000214049UCA1qPCR, Western blot etc.27056384
ENSG00000214548MEG3qPCR, Western bolt, RNAi etc.24006224
ENSG00000222041LINC00152qPCR, Western blot, Northern blot, RNAi etc.24523021
ENSG00000223573TINCRRNA-seq, qPCR, Western blot, RNAi etc.25728677
ENSG00000224220AC104699microarray, qPCR etc.26045391
ENSG00000224541AP001439microarray, qPCR etc.26045391
ENSG00000225969LINC00035qPCR etc.24984296
ENSG00000228630HOTAIRqPCR, Western blot etc.25063030
ENSG00000234425RP11-528G1microarray, qPCR etc.26045391
ENSG00000234492RPL34-AS1microarray, qPCR etc.26237576
ENSG00000234741GAS5qPCR, Western blot, RNAi, RIP, Flow cytometry assay ect.26278580
ENSG00000239523MYLK-AS1microarray, qPCR etc.26045391
ENSG00000240498CDKN2B-AS1qPCR, Western blot, RNAi, RIP etc.24810364
ENSG00000242385LINC00901microarray, qPCR, RNAi etc.25765901
ENSG00000243197TUSC7microarray, qPCR, RNAi etc.25765901
ENSG00000247844CCAT1qPCR, Western bolt, RNAi, Luciferase reporter assay, RIP etc.23143645
ENSG00000249859PVT1qPCR, Western blot etc.25956062
ENSG00000250266RP11-789C1microarray, qPCR etc.26045391
ENSG00000251164HULCqPCR, Western blot etc.24247585
ENSG00000251562MALAT1qPCR, Western blot, RNAi etc.24857172
ENSG00000253576GS1-5L10microarray, qPCR etc.26045391
ENSG00000258609LINC-RORqPCR, Western blot, RNAi etc.26169368
ENSG00000258667HIF1A-AS2qPCR etc.25686741
ENSG00000259251RP11-643M14microarray, qPCR etc.26045391
ENSG00000259974LINC00261microarray, qPCR etc.26237576
ENSG00000268388FENDRRqPCR, Western blot etc.25167886
ENSG00000270123VTRNA2-1RNA-seq, qPCR etc.25003254

Experimentally supported LIHC-related lncRNAs used as seeds in CLING.

Ensembl ID Gene Symbol Validation methods Reference
ENSG00000099869IGF2-ASqPCR, Northern blot etc.12702581
ENSG00000130600H19qPCR, Western bolt, Northern bolt, in vitro knockdown, RIP etc.23222811
ENSG00000176840MIR7-3HGmicroarray, qPCR etc.23643933
ENSG00000177410ZFAS1qPCR, Luciferase reporter assay, RIP etc.26069248
ENSG00000196668LINC00173microarray, qPCR etc.25556502
ENSG00000204949FAM83A-AS1microarray, qPCR etc.25025236
ENSG00000214049UCA1qPCR, Western blot, RNAi, RIP etc.25760077
ENSG00000214548MEG3microarray, qPCR etc.21625215
ENSG00000222041LINC00152qPCR, Western blot, RNAi,Dual-Luciferase reporter assay etc.27351280
ENSG00000224057EGFR-AS1microarray, qPCR, Western blot, RNAi, FCA etc.26271667
ENSG00000226113RP11-672F9microarray, qPCR etc.25556502
ENSG00000226629LINC00974qPCR, in vitro knockdown, RIP etc.25476897
ENSG00000226950DANCRqPCR etc.25964079
ENSG00000227373RP11-160H22microarray, qPCR etc.25714016
ENSG00000228630HOTAIRmicroarray, qPCR, RNAi, Western blot etc.24663081
ENSG00000230844ZNF674-AS1microarray, qPCR etc.25025236
ENSG00000234741GAS5qPCR, Western blot, Luciferase reporter assay, RNAi etc.26404135
ENSG00000237036ZEB1-AS1microarray, qPCR, RNAi etc.26073087
ENSG00000240498CDKN2B-AS1qPCR, Western blot, RNAi, RIP etc.25966845
ENSG00000242808SOX2-OTqPCR, RNAi etc.26097588
ENSG00000243766HOTTIPqPCR, Western blot, RNAi etc.24114970
ENSG00000249859PVT1qPCR etc.25624916
ENSG00000250056LINC01018qPCR etc.25512078
ENSG00000251164HULCmicroarray, qPCR, RNAi etc.23728852
ENSG00000251562MALAT1qPCR, Western blot, RNAi, Dual-luciferase assay etc.25773124
ENSG00000253352TUG1qPCR, Western bolt, RNAi, RIP, FCA etc.26336870
ENSG00000254100RP11-675F6microarray, qPCR etc.24465615
ENSG00000258609LINC-RORqPCR, Luciferase reporter assays, RNAi etc.24918061
ENSG00000269235HCCAT3microarray, qPCR, RIP, RNA pulldown assay etc.21769904
ENSG00000269821KCNQ1OT1qPCR etc.23984860

Experimentally supported LGG-related lncRNAs used as seeds in CLING.

Ensembl ID Gene Symbol Validation methods Reference
ENSG00000130600H19qRCR, Western Blot, Flow cytometry assay etc.26983719
ENSG00000177640CASC2qPCR, Luciferase reporter assay etc.25446261
ENSG00000214548MEG3qPCR, Luciferase reporter assay etc.22234798
ENSG00000224328MDC1-AS1qPCR, Western blot, RNAi, Cell proliferation assay ect.27261595
ENSG00000227199ST7-AS1qPCR etc.25645334
ENSG00000228630HOTAIRqPCR, Western blot, Northern blot, CHIP ect.27277755
ENSG00000234883MIR155HGqPCR etc.25645334
ENSG00000236824BCYRN1qPCR etc.25645334
ENSG00000240498CDKN2B-AS1qPCR etc.20386740
ENSG00000241684ADAMTS9-AS2qPCR, Western blot, RNAi etc.24833086
ENSG00000245532NEAT1qPCR etc.26582084
ENSG00000245694CRNDEqPCR, Western blot, RNAi etc.25813405
ENSG00000251164HULCqPCR, Western blot etc.26894862
ENSG00000251562MALAT1qPCR, Western blot, Luciferase reporter assays, RIP, ChIP etc.26619802
ENSG00000253352TUG1qPCR, Western blot, RNAi, Luciferase reporter assay etc.27363339
ENSG00000256164RP11-264F23qPCR etc.27923660
ENSG00000230798RP4-792G4qPCR, Western blot, Cell proliferation assay etc.null
ENSG00000250786SNHG18qPCR, ISH etc.27788958
ENSG00000237853RP5-833A20qPCR, Western blot, BSP assay etc.27779670
ENSG00000243197TUSC7qPCR, RNA pull-down assay, Luciferase reporter assay etc27766072
ENSG00000243766HOTTIPqPCR, Cell proliferation assay, Luciferase reporter assay etc.27733185
ENSG00000247095MIR210HGmicroarray, qPCR etc.27673330
ENSG00000237036ZEB1-AS1qPCR, Western blot, RNAi, Flow Cytometry Analysis etc.27589728

Experimentally supported CESC-related lncRNAs used as seeds in CLING.

Ensembl ID Gene Symbol Validation methods Reference
ENSG00000214548.10MEG3qPCR, Western blot, RNAi etc.26574780
ENSG00000228630.1HOTAIRqPCR, Western blot, RNAi etc.25405331
ENSG00000234741.3GAS5qPCR, RNAi etc.25400758
ENSG00000236824.1BCYRN1ISH, Northern hybridization etc.9422992
ENSG00000237361.2LINC01071qPCR, Western blot, RNAi etc.24667250
ENSG00000240498.2CDKN2B-AS1qPCR, RNAi etc.26408699
ENSG00000249859.3PVT1qPCR, Western blot, RNAi, Cell proliferation assay ect.27232880
ENSG00000251562.3MALAT1qPCR, Western blot, RNAi, Dual-luciferase assay etc.25773124
ENSG00000229807.5XISTqPCR etc.27899965
ENSG00000240990.5HOXA11-ASqPCR, RNAi, Cell proliferation assay etc.27792998
ENSG00000251164.1HULCqPCR etc.27775802
ENSG00000130600.11H19qPCR etc.27633578
ENSG00000255248.2RP11-166D19.1qPCR etc.27035672
ENSG00000236833.1AC024560.2qPCR etc.27035672

Experimentally supported GBM-related lncRNAs used as seeds in CLING.

Ensembl ID Gene Symbol Validation methods Reference
ENSG00000130600H19qPCR, Neurosphere Formation assay etc.26274999
ENSG00000214293RSBN1L-AS1qPCR, Northern blot, Luciferase reporter assays, RNAi etc.24748121
ENSG00000228630HOTAIRCHIP-PCR ect.25823657
ENSG00000229807XISTqPCR, Luciferase reporter assay, RIP etc.25578780
ENSG00000253352TUG1qPCR, RNAi etc27345398
ENSG00000197291RAMP2-AS1qPCR etc.27784795
ENSG00000258609LINC-RORqPCR etc.27738870
ENSG00000261924CTD-2561B21qPCR etc.27432080
ENSG00000235427AC006159.5qPCR etc.27432080
ENSG00000259254CTD-2339L15microarray, qPCR etc.27604987
ENSG00000266835RP11-838N2qPCR, Western blot, Luciferase reporter assay etc.27270310
ENSG00000258667HIF1A-AS2qPCR, RNA pulldown assay etc.27264189
ENSG00000266904LINC00663qPCR etc.26743782
ENSG00000251562MALAT1qPCR etc.25772239

Experimentally supported KIRC-related lncRNAs used as seeds in CLING.

Ensembl ID Gene Symbol Validation methods Reference
ENSG00000214049.6UCA1qPCR, RNAi etc26935146
ENSG00000214548.10MEG3qPCR, Western blot, FCA etc.26223924
ENSG00000228630.1HOTAIRqPCR, Western blot, RNAi, ChIP etc.25149152
ENSG00000234741.3GAS5qPCR etc.23621190
ENSG00000251562.3MALAT1qPCR, RNAi etc.25480417
ENSG00000253352.4TUG1qPCR, RNAi ect.27323757
ENSG00000230590.3FTXqPCR, Cell proliferation assay etc.27983937
ENSG00000245694.4CRNDEqPCR, Western blot, RNAi, Dual-luciferase assay etc.27714674
ENSG00000247095.2MIR210HGqPCR, RNAi, Cell proliferation assay etc.27602119
ENSG00000187621.10TCL6qPCR, Cell proliferation assay etc.27494890
ENSG00000177640.11CASC2qPCR, Dual-luciferase assay etc.27222255
ENSG00000222041.6LINC00152qPCR, RNAi, Cell proliferation assay etc.27186403
ENSG00000248275.1TRIM52-AS1qPCR etc.26934858
ENSG00000260455.1CASC14qPCR, RNAi, Cell proliferation assay etc.26097558
ENSG00000130600.11H19qPCR, RNAi etc.25866221

Experimentally supported THCA-related lncRNAs used as seeds in CLING.

Ensembl ID Gene Symbol Validation methods Reference
ENSG00000130600.11H19qPCR, Luciferase reporter assay etc.27093644
ENSG00000259104.2PTCSC3microarray, qPCR, Western blot etc.26274343
ENSG00000249859.3PVT1qPCR, Western blot, RIP, ChIP etc.26427660
ENSG00000245532.4NEAT1microarray, qPCR etc.25997963
ENSG00000271086.1NAMAqPCR, Western blot, Northern blot, RNAi etc.17415708
ENSG00000214548.10MEG3microarray, qPCR etc.25997963
ENSG00000251562.3MALAT1microarray, qPCR etc.25997963
ENSG00000251164.1HULCmicroarray, qPCR etc.25997963
ENSG00000228630.1HOTAIRmicroarray, qPCR etc.25997963
ENSG00000261399.1LA16c-329F2.1microarray, qPCR etc.27347178
ENSG00000248329.1RP11-366M4.3microarray, qPCR etc.27347178
ENSG00000250472.1TRIM36-IT1microarray, qPCR etc.27347178
ENSG00000224093.1RP5-1033H22.2microarray, qPCR etc.27347178
ENSG00000226363.3AC009336.24cell viabilty assay, EDU formation assay etc.26824456
ENSG00000228079.1AC012368.1microarray, qPCR etc.27347178
ENSG00000237396.1RP4-788L20.3microarray, qPCR etc.26003293

Experimentally supported UCEC-related lncRNAs used as seeds in CLING.

Ensembl ID Gene Symbol Validation methods Reference
ENSG00000197989SNHG12microarray, qPCR etc.25695231
ENSG00000204623ZNRD1-AS1microarray, qPCR etc.26131074
ENSG00000237125HAND2-AS1microarray, qPCR etc.26131074
ENSG00000249545CTC-558O19microarray, qPCR etc.26131074
ENSG00000228630HOTAIRqPCR, RNAi etc.24758900
ENSG00000251127RP11-280G9microarray, qPCR etc.26131074
ENSG00000214548MEG3qPCR, Western blot etc.27470401
ENSG00000247844CCAT1qPCR etc.27432114
ENSG00000234741GAS5qPCR, Western blot, Luciferase reporter assay etc.26511107
ENSG00000258779RP11-140I24qPCR etc.27748922

lncRNA references ID



Network Coverage



Candidate lncRNAs Try an example: Ensembl Gene list or Gene Symbol list

Or choose a txt file to upload