LncRNA NameHOTAIR
Variant TypeSNP
Variant IDrs920778
Specieshuman
Circulating
Survival
CeRNA
Methylation
Enhancer
Drug
Disease/Traitesophageal squamous cell carcinoma
LncRNA Target GeneNA
Tissue(KYSE-30, KYSE-150) cell lines
Experimentgenotyping, real-time PCR, luciferase reporter assay
Function DescriptionThe rs920778 C>T SNP located in the intronic enhancer region alters the activity of this enhancer, resulting in increased HOTAIR RNA expression, which might be the underlying mechanism in conferring ESCC susceptibility.
Pubmed ID24788237
Year2014
TitleThe Identification of a ESCC Susceptibility SNP rs920778 That Regulates the Expression of lncRNA HOTAIR via a Novel Intronic Enhancer
External Links
Links For HOTAIRGeneCards HGNC NONCODE LncRNAWiki lncrnadb
Links For esophageal squamous cell carcinomaOMIM Cosmic
Links For rs920778 dbSNP ClinVar OMIM