LncRNA NameMALAT1
Variant TypeSNP
Variant IDrs664589
Specieshuman
Circulating
Survival
CeRNA
Methylation
Enhancer
Drug
Disease/Traitcolorectal cancer
LncRNA Target GeneNA
Tissuecolorectal cancer tissues , cell line( HT-29)
ExperimentqPCR,Luciferase reporter assay etc
Function DescriptionlncRNA MALAT1 was upregulated, while hsa-miR-194-5p was downregulated, in cancer tissues of CRC patients.The risk of CRC was relatively higher among MALAT1 rs664589 G allele carriers, and the CRC patients with a G allele had a lower PFS. The likely mechanism underlying these observations is that the rs664589 SNP affects the binding efficiency between the lncRNA MALAT1 and the miRNA has-miR-194-5p, although this awaits laboratory confirmation
Pubmed ID32349546
Year2020
TitleMicroRNA Binding Site Polymorphisms of the Long-Chain Noncoding RNA MALAT1 are Associated with Risk and Prognosis of Colorectal Cancer in Chinese Han Population.
External Links
Links For MALAT1GeneCards HGNC NONCODE LncRNAWiki lncrnadb
Links For colorectal cancerOMIM Cosmic
Links For rs664589 dbSNP ClinVar OMIM