LncRNA NameMALAT1
Variant TypeSNP
Variant IDrs664589
Specieshuman
Circulating
Survival
CeRNA
Methylation
Enhancer
Drug
Disease/Traitcolorectal cancer
LncRNA Target GeneNA
TissueHuman CRC cells (SW480 and SW620), CRC tissues and the corresponding adjacent 17 noncancerous tissues,
ExperimentqPCR, Western blot, Luciferase reporter assay, RIP
Function Description MALAT1 rs664589 CG/GG genotypes significantly increased the associated risk and decreased overall survival of patients with colorectal cancer compared with the CC genotype. In vitro and in vivo experiments showed that the rs664589 C to G mutation facilitated carcinogenesis and metastasis of colorectal cancer. Mechanistically, the miRNA miR-194-5p targeted MALAT1 for degradation in the nucleus in an Ago2-dependent manner; the rs664589 G allele altered the binding of MALAT1 to miR-194-5p, resulting in increased expression of MALAT1. Colorectal cancer cells and human tissues with the rs664589 CG/GG genotype expressed significantly higher MALAT1 than those with the rs664589 CC genotype. Multivariate Cox regression analysis showed that MALAT1 was a poor prognostic factor of colorectal cancer.
Pubmed ID31311811
Year2019
TitleMALAT1 rs664589 polymorphism inhibits binding to miR-194-5p 2 contributing to colorectal cancer risk, growth and metastasis
External Links
Links For MALAT1GeneCards HGNC NONCODE LncRNAWiki lncrnadb
Links For colorectal cancerOMIM Cosmic
Links For rs664589 dbSNP ClinVar OMIM