LncRNA NameMALAT1
Variant TypeSNP
Variant IDrs619586
Specieshuman
Circulating
Survival
CeRNA
Methylation
Enhancer
Drug
Disease/Traitbreast cancer
LncRNA Target GeneNA
TissueBC tissues and para-carcinoma tissues
ExperimentqRT-PCR
Function Descriptionall three tagging SNPs (rs3200401, rs619586 and rs7927113) in lncRNA MALAT1 were selected for genotyping in 487BCE patients and 489 cancer-free controls in Chinese Han population, and futher experiment of quantitative real-time (qRT) PCR was conducted to examine the relative expression of MALAT1. The results showed that individuals with genotype AG of rs619586 has a decreased risk of BC in codominant model (OR: 0.684, 95%CI: 0.478-0.979), dominant mode (OR: 0.675, 95%CI: 0.479-0.951) and over-dominant model (OR: 0.692, 95%CI: 0484-0.989). Also, qRT-PCR results revealed that the expression for MALAT1 with AG, GG) and AG+GG genotypes of rs619586 was significantly lower than that with genotype AA
Pubmed ID29146194
Year2018
TitleAssociation analyses of genetic variants in long non-coding RNA MALAT1 with breast cancer susceptibility and mRNA expression of MALAT1 in Chinese Han population.
External Links
Links For MALAT1GeneCards HGNC NONCODE LncRNAWiki lncrnadb
Links For breast cancerOMIM Cosmic
Links For rs619586 dbSNP ClinVar OMIM