Unsupervised clustering |
Cell types
B-Lym
Plasma
B-Nai
B-Reg
B-Mem
B-Fol
GC B
GC B-DZ
GC B-LZ
NK
T-Lym
T-Nai
T-Pro
T-TRM
T-EM
NKT
T-gd
CD4+ T
CD4+ T-Nai
CD4+ T-Mem
Th1
Th2
Th17
T-FH
T-Reg
CD8+ T
CD8+ T-Nai
T-Cyt
CD8+ T-Eff
CD8+ T-Mem
T-Exh
Myeloid
Monocyte
Macrophage
Mac-M1
Mac-M2
DC
cDC1
cDC2
aDC
pDC
Neutrophils
MAST
Progenitor
Erythroid
Cycling
Pre-B
Pro-B
GC B-I
GC B-II
Plasmablasts
ABC
NK-CD16+
NK-CD56bright-CD16-
T&NK-Cyc
T-CD4;CD8
T-Eff;EM-CD4
T-EM;EMRA-CD8
T-Nai;CM-CD4
T-Nai;CM-CD4-Act
T-Nai;CM-CD8
T-RM;EM-CD8
TRM-gut-CD8
TRM-Tgd
TRM-Th1;Th17
Tgd-CRTAM+
MAIT
T;B
MNP;B
MNP;T
Megakaryocytes
Mon-Cls
Mon-nonCls
Mac-Ery
Mac-Alv
Mac-IntMed
Mac-Int
DC1
DC2
migDC
ILC3
Unknown
Marker genes of cell clusters
I. Overview
| Cell Type | Full Name | Canonical Marker Gene | Context-specific Marker Gene |
|---|
II. Heatmap
III. Violin plot
|
Expression of selected marker across cell types |
Functional annotation of cell clusters
I. ssGSEA score
Note : * for hypergeometric test between specifically expressing marker genes and signatures for each function of cell state
II. Significant results of hypergeometric test
I. ssGSEA score
Note : * for hypergeometric test between specifically expressing marker genes and signatures for each function of immune pathway
II. Significant results of hypergeometric test
I. ssGSEA score
Note : * for hypergeometric test between specifically expressing marker genes and signatures for each function of cancer hallmark
II. Significant results of hypergeometric test
Cell-Cell communications
I. Overview
II. River plot
III. Circos plot
I. Overview
II. River plot
III. Circos plot
I. Overview
II. River plot
III. Circos plot