Basic Information
Basic information for Sox1ot-201-217aa
Peptide Name Sox1ot-201-217aa
Genome Position chr8:12429930-12429968,12429970-12430038,12430150-12430692[+]
Species Mouse
Peptide Sequence MEDPSRDPEDPRPGGGDISWGAINNCPPLPVIFPELCGEGDCEALCWNLAARRLGEQPHAGSYSAGQFSSSFGSFTQPCTQWLHKADYKLQRIPEGAKSDAGANEPREPLIPVTEWDKLGKAWTTQIQGSPGSREPALGTGGHYPPYSAGPGTLGPRRPAGRKRHRQYAPAAVGTPLGVATRRDVGRCVCSHRQRSAKSILRVKAGVQANRDTGEGG
Peptide Length 217
Unique Yes
Grand Average of Hydropathicity -0.7267
Relative Molecular Mass 27083.38
Experimental Evidences 3:lncORF,m6A,ribo
lncRNA ID/Name ENSMUSG00000047935;Sox1ot
Transcript ID/Name ENSMUST00000080795;Sox1ot-201
Transcript Length 5064
Coding Ability 0.4457
DNA Sequence Corresponding to Peptide ATGGAGGACCCCTCCAGAGACCCAGAAGACCCCCGCCCGGGGGGGGGTGACATCAGTTGGGGAGCTATTAATAACTGCCCTCCCCTCCCTGTCATATTTCCTGAACTGTGTGGGGAAGGCGATTGTGAGGCGCTCTGCTGGAATTTGGCAGCGCGGAGGCTTGGAGAGCAGCCCCATGCTGGCTCCTATTCAGCCGGCCAGTTTTCCTCGAGCTTTGGAAGTTTCACTCAGCCGTGCACTCAATGGCTTCACAAAGCTGATTACAAGCTTCAGCGCATTCCTGAAGGAGCCAAAAGCGACGCAGGTGCAAACGAGCCGAGGGAGCCCCTTATCCCGGTGACAGAATGGGACAAGCTGGGAAAGGCTTGGACCACACAAATCCAAGGCTCACCAGGCAGCAGAGAGCCTGCCTTGGGAACCGGGGGTCATTATCCGCCCTATTCAGCGGGACCGGGGACCCTGGGGCCAAGGAGGCCGGCCGGGCGCAAGCGCCACCGCCAGTACGCGCCTGCAGCAGTGGGGACCCCGCTGGGCGTTGCAACCCGTCGGGATGTTGGGCGCTGCGTTTGTTCCCACCGACAGCGGTCAGCGAAATCCATCCTGCGGGTGAAAGCCGGTGTCCAGGCTAACCGGGATACAGGAGAAGGAGGG
Experimental Evidences
   lncORF
   m6A
   Occupancy of Ribosomes
Tissue :    
Expression type:    Count RPKM
Conservation
   Conservation
Peptide-MHC I binding
   Peptide-MHC I binding
Peptide-MHC II binding
   Peptide-MHC II binding
Spatial Expression
   Spatial Expression
Source :