AAA_GSE166676 Abdominal aortic aneurysm AAA Human GSE166676 None 5 7734 Illumina NovaSeq 6000 Normal all cell Aortic Davis FM, et al.; 33779682 ACC_GSE113660 Adrenocortical Carcinoma ACC Rh41 cell line GSE113660 None - 6875 10x Genomics - malignant cell Cell Line: Rh41 Chen W, et al. Genome Biol. ...; 29855333 AD_GSE198323 Alzheimers disease AD Human GSE198323 None 6 2470 NextSeq 550 Normal all cell Hippocampus Zhou Y, et al.; 35794479 AEL_GSE142213 Acute Erythroid Leukemia AEL Human GSE142213 None 2 3994 10x Genomics Primary all cell Bone marrow Di Genua C, et al. Cancer Ce...; 32330454 AML_GSE147989 Acute Myeloid Leukemia AML Human GSE147989 Targeted therapy 2 7389 10x Genomics Primary all cell Bone marrow -; 32601337 AML_GSE205490 Acute myeloid leukemia AML Human GSE205490 None 2 2643 10x Genomics Normal mononuclear cells Bone marrow Guess T, et al.; 35522837 AS_GSE131778 Atherosclerosis AS Human GSE131778 None 8 11756 10x Genomics Normal all cell Heart Wirka RC, et al.; 31359001 BC_GSE146137 Bladder cancer BC Human;Mouse GSE146137 None 8 3828 Illumina NextSeq 500 Normal CD45 cell Bladder Sfakianos JP, et al; 32439865 BLCA_GSE130001 Bladder Urothelial Carcinoma BLCA Human GSE130001 None 2 4129 10x Genomics Primary all cell Bladder Wang L, et al. Genome Med 2020; 32111252 BP_GSE167118_BALF_moderate Bacterial pneumonia BP Human GSE167118 None 3 5560 10x Genomics Moderate all cell Bronchoalveolar lavage fluid of Moderate Bacterial pneumonia Zhao Z,et al.2021; 33622974 BP_GSE167118_BALF_no Bacterial pneumonia BP Human GSE167118 None 1 3349 10x Genomics No all cell Bronchoalveolar lavage fluid of Bacterial pneumonia Zhao Z,et al.2021; 33622974 BP_GSE167118_blood_no Bacterial pneumonia BP Human GSE167118 None 1 6988 10x Genomics No all cell Peripheral blood of Bacterial pneumonia Zhao Z,et al.2021; 33622974 BRCA_GSE110686 Breast Invasive Carcinoma BRCA Human GSE110686 None 2 6035 10x Genomics Primary, Metastatic all cell Breast Savas P, et al. Nat Med 2018; 29942092 BRCA_GSE138536 Breast Invasive Carcinoma BRCA Human GSE138536 None 8 1902 Smart-seq2 Primary all cell Breast Gulati GS, et al. 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32214235 HCL_GSE134355_AdultBladder1 Normal Normal Human GSE134355 None 1 1267 Microwell-seq Normal all cell Bladder Han X, et al.; 32214235 HCL_GSE134355_AdultBladder2 Normal Normal Human GSE134355 None 1 2750 Microwell-seq Normal all cell Bladder Han X, et al.; 32214235 HCL_GSE134355_AdultBoneMarrow1 Normal Normal Human GSE134355 None 1 2261 Microwell-seq Normal all cell Bone Marrow Han X, et al.; 32214235 HCL_GSE134355_AdultBoneMarrow2 Normal Normal Human GSE134355 None 1 6443 Microwell-seq Normal all cell Bone Marrow Han X, et al.; 32214235 HCL_GSE134355_AdultCerebellum1 Normal Normal Human GSE134355 None 1 7324 Microwell-seq Normal all cell Cerebellum Han X, et al.; 32214235 HCL_GSE134355_AdultCervix1 Normal Normal Human GSE134355 None 1 8096 Microwell-seq Normal all cell Cervix Han X, et al.; 32214235 HCL_GSE134355_AdultDuodenum1 Normal Normal Human GSE134355 None 1 4681 Microwell-seq Normal all cell Duodenum Han X, et al.; 32214235 HCL_GSE134355_AdultEpityphlon1 Normal Normal Human GSE134355 None 1 4486 Microwell-seq Normal all cell Epityphlon Han X, et al.; 32214235 HCL_GSE134355_AdultEsophagus1 Normal Normal Human GSE134355 None 1 2696 Microwell-seq Normal all cell Esophagus Han X, et al.; 32214235 HCL_GSE134355_AdultEsophagus2 Normal Normal Human GSE134355 None 1 8668 Microwell-seq Normal all cell Esophagus Han X, et al.; 32214235 HCL_GSE134355_AdultFallopiantube1 Normal Normal Human GSE134355 None 1 6556 Microwell-seq Normal all cell Fallopiantube Han X, et al.; 32214235 HCL_GSE134355_AdultGallbladder1 Normal Normal Human GSE134355 None 1 9769 Microwell-seq Normal all cell Gallbladder Han X, et al.; 32214235 HCL_GSE134355_AdultGallbladder2 Normal Normal Human GSE134355 None 1 5031 Microwell-seq Normal all cell Gallbladder Han X, et al.; 32214235 HCL_GSE134355_AdultHeart1 Normal Normal Human GSE134355 None 1 1308 Microwell-seq Normal all cell Heart Han X, et al.; 32214235 HCL_GSE134355_AdultHeart2 Normal Normal Human GSE134355 None 1 1478 Microwell-seq Normal all cell Heart Han X, et al.; 32214235 HCL_GSE134355_AdultIleum2 Normal Normal Human GSE134355 None 1 3367 Microwell-seq Normal all cell Jejunum Han X, et al.; 32214235 HCL_GSE134355_AdultJejunum2 Normal Normal Human GSE134355 None 1 5549 Microwell-seq Normal all cell Kidney Han X, et al.; 32214235 HCL_GSE134355_AdultKidney2 Normal Normal Human GSE134355 None 1 9153 Microwell-seq Normal all cell Kidney Han X, et al.; 32214235 HCL_GSE134355_AdultKidney3 Normal Normal Human GSE134355 None 1 9966 Microwell-seq Normal all cell Kidney Han X, et al.; 32214235 HCL_GSE134355_AdultKidney4 Normal Normal Human GSE134355 None 1 3849 Microwell-seq Normal all cell Kidney Han X, et al.; 32214235 HCL_GSE134355_AdultLiver1 Normal Normal Human GSE134355 None 1 1811 Microwell-seq Normal all cell Liver Han X, et al.; 32214235 HCL_GSE134355_AdultLiver2 Normal Normal Human GSE134355 None 1 4377 Microwell-seq Normal all cell Liver Han X, et al.; 32214235 HCL_GSE134355_AdultLiver4 Normal Normal Human GSE134355 None 1 4384 Microwell-seq Normal all cell Liver Han X, et al.; 32214235 HCL_GSE134355_AdultLung1 Normal Normal Human GSE134355 None 1 8426 Microwell-seq Normal all cell Lung Han X, et al.; 32214235 HCL_GSE134355_AdultLung2 Normal Normal Human GSE134355 None 1 6022 Microwell-seq Normal all cell Lung Han X, et al.; 32214235 HCL_GSE134355_AdultLung3 Normal Normal Human GSE134355 None 1 9603 Microwell-seq Normal all cell Lung Han X, et al.; 32214235 HCL_GSE134355_AdultMuscle1 Normal Normal Human GSE134355 None 1 7775 Microwell-seq Normal all cell Muscle Han X, et al.; 32214235 HCL_GSE134355_AdultOmentum1 Normal Normal Human GSE134355 None 1 1487 Microwell-seq Normal all cell Omentum Han X, et al.; 32214235 HCL_GSE134355_AdultOmentum2 Normal Normal Human GSE134355 None 1 9971 Microwell-seq Normal all cell Omentum Han X, et al.; 32214235 HCL_GSE134355_AdultOmentum3 Normal Normal Human GSE134355 None 1 1354 Microwell-seq Normal all cell Omentum Han X, et al.; 32214235 HCL_GSE134355_AdultPancreas1 Normal Normal Human GSE134355 None 1 9727 Microwell-seq Normal all cell Pancreas Han X, et al.; 32214235 HCL_GSE134355_AdultPeripheralBlood1 Normal Normal Human GSE134355 None 1 2719 Microwell-seq Normal all cell Peripheral Blood Han X, et al.; 32214235 HCL_GSE134355_AdultPeripheralBlood2 Normal Normal Human GSE134355 None 1 5296 Microwell-seq Normal all cell Peripheral Blood Han X, et al.; 32214235 HCL_GSE134355_AdultPeripheralBlood3 Normal Normal Human GSE134355 None 1 2156 Microwell-seq Normal all cell Peripheral Blood Han X, et al.; 32214235 HCL_GSE134355_AdultPeripheralBlood4 Normal Normal Human GSE134355 None 1 7160 Microwell-seq Normal all cell Peripheral Blood Han X, et al.; 32214235 HCL_GSE134355_AdultProstate1 Normal Normal Human GSE134355 None 1 2445 Microwell-seq Normal all cell Prostate Han X, et al.; 32214235 HCL_GSE134355_AdultRectum1 Normal Normal Human GSE134355 None 1 5718 Microwell-seq Normal all cell Rectum Han X, et al.; 32214235 HCL_GSE134355_AdultSigmoidColon1 Normal Normal Human GSE134355 None 1 3281 Microwell-seq Normal all cell Colon Han X, et al.; 32214235 HCL_GSE134355_AdultStomach1 Normal Normal Human GSE134355 None 1 1879 Microwell-seq Normal all cell Stomach Han X, et al.; 32214235 HCL_GSE134355_AdultStomach2 Normal Normal Human GSE134355 None 1 4669 Microwell-seq Normal all cell Stomach Han X, et al.; 32214235 HCL_GSE134355_AdultStomach3 Normal Normal Human GSE134355 None 1 8076 Microwell-seq Normal all cell Stomach Han X, et al.; 32214235 HCL_GSE134355_AdultTemporalLobe1 Normal Normal Human GSE134355 None 1 9544 Microwell-seq Normal all cell Lobe Han X, et al.; 32214235 HCL_GSE134355_AdultThyroid1 Normal Normal Human GSE134355 None 1 6319 Microwell-seq Normal all cell Thyroid Han X, et al.; 32214235 HCL_GSE134355_AdultThyroid2 Normal Normal Human GSE134355 None 1 6328 Microwell-seq Normal all cell Thyroid Han X, et al.; 32214235 HCL_GSE134355_AdultTrachea2 Normal Normal Human GSE134355 None 1 9949 Microwell-seq Normal all cell Trachea Han X, et al.; 32214235 HCL_GSE134355_AdultTransverseColon1 Normal Normal Human GSE134355 None 1 5765 Microwell-seq Normal all cell Colon Han X, et al.; 32214235 HCL_GSE134355_AdultUreter1 Normal Normal Human GSE134355 None 1 2390 Microwell-seq Normal all cell Ureter Han X, et al.; 32214235 HCL_GSE134355_AdultUterus1 Normal Normal Human GSE134355 None 1 7694 Microwell-seq Normal all cell Ureter Han X, et al.; 32214235 HCL_GSE134355_ChorionicVillus1 Normal Normal Human GSE134355 None 1 9898 Microwell-seq Normal all cell Chorionic Villus Han X, et al.; 32214235 HCL_GSE134355_CordBlood1 Normal Normal Human GSE134355 None 1 2150 Microwell-seq Normal all cell Cord Blood Han X, et al.; 32214235 HCL_GSE134355_CordBlood2 Normal Normal Human GSE134355 None 1 4444 Microwell-seq Normal all cell Cord Blood Han X, et al.; 32214235 HCL_GSE134355_CordBloodCD34P1 Normal Normal Human GSE134355 None 1 5607 Microwell-seq Normal all cell Cord Blood CD34 Han X, et al.; 32214235 HCL_GSE134355_FetalAdrenalGland2 Normal Normal Human GSE134355 None 1 9875 Microwell-seq Normal all cell Adrenal Gland Han X, et al.; 32214235 HCL_GSE134355_FetalAdrenalGland3 Normal Normal Human GSE134355 None 1 2547 Microwell-seq Normal all cell Adrenal Gland Han X, et al.; 32214235 HCL_GSE134355_FetalAdrenalGland4 Normal Normal Human GSE134355 None 1 1994 Microwell-seq Normal all cell Adrenal Gland Han X, et al.; 32214235 HCL_GSE134355_FetalBrain3 Normal Normal Human GSE134355 None 1 2904 Microwell-seq Normal all cell Brain Han X, et al.; 32214235 HCL_GSE134355_FetalBrain4 Normal Normal Human GSE134355 None 1 3920 Microwell-seq Normal all cell Brain Han X, et al.; 32214235 HCL_GSE134355_FetalBrain5 Normal Normal Human GSE134355 None 1 5096 Microwell-seq Normal all cell Brain Han X, et al.; 32214235 HCL_GSE134355_FetalBrain6 Normal Normal Human GSE134355 None 1 1705 Microwell-seq Normal all cell Brain Han X, et al.; 32214235 HCL_GSE134355_FetalCalvaria1 Normal Normal Human GSE134355 None 1 5129 Microwell-seq Normal all cell Calvaria Han X, et al.; 32214235 HCL_GSE134355_FetalEyes1 Normal Normal Human GSE134355 None 1 1880 Microwell-seq Normal all cell Eye Han X, et al.; 32214235 HCL_GSE134355_FetalFemaleGonad1 Normal Normal Human GSE134355 None 1 2710 Microwell-seq Normal all cell Female Gonad Han X, et al.; 32214235 HCL_GSE134355_FetalFemaleGonad2 Normal Normal Human GSE134355 None 1 4231 Microwell-seq Normal all cell Female Gonad Han X, et al.; 32214235 HCL_GSE134355_FetalHeart1 Normal Normal Human GSE134355 None 1 5319 Microwell-seq Normal all cell Heart Han X, et al.; 32214235 HCL_GSE134355_FetalHeart2 Normal Normal Human GSE134355 None 1 2678 Microwell-seq Normal all cell Heart Han X, et al.; 32214235 HCL_GSE134355_FetalIntestine1 Normal Normal Human GSE134355 None 1 1448 Microwell-seq Normal all cell Intestine Han X, et al.; 32214235 HCL_GSE134355_FetalIntestine2 Normal Normal Human GSE134355 None 1 1338 Microwell-seq Normal all cell Intestine Han X, et al.; 32214235 HCL_GSE134355_FetalIntestine3 Normal Normal Human GSE134355 None 1 9740 Microwell-seq Normal all cell Intestine Han X, et al.; 32214235 HCL_GSE134355_FetalIntestine4 Normal Normal Human GSE134355 None 1 6931 Microwell-seq Normal all cell Intestine Han X, et al.; 32214235 HCL_GSE134355_FetalIntestine5 Normal Normal Human GSE134355 None 1 4059 Microwell-seq Normal all cell Intestine Han X, et al.; 32214235 HCL_GSE134355_FetalKidney3 Normal Normal Human GSE134355 None 1 4939 Microwell-seq Normal all cell Kidney Han X, et al.; 32214235 HCL_GSE134355_FetalKidney4 Normal Normal Human GSE134355 None 1 4734 Microwell-seq Normal all cell Kidney Han X, et al.; 32214235 HCL_GSE134355_FetalKidney5 Normal Normal Human GSE134355 None 1 9932 Microwell-seq Normal all cell Kidney Han X, et al.; 32214235 HCL_GSE134355_FetalKidney6 Normal Normal Human GSE134355 None 1 3057 Microwell-seq Normal all cell Kidney Han X, et al.; 32214235 HCL_GSE134355_FetalLung1 Normal Normal Human GSE134355 None 1 4526 Microwell-seq Normal all cell Lung Han X, et al.; 32214235 HCL_GSE134355_FetalLung2 Normal Normal Human GSE134355 None 1 5121 Microwell-seq Normal all cell Lung Han X, et al.; 32214235 HCL_GSE134355_FetalMaleGonad1 Normal Normal Human GSE134355 None 1 3358 Microwell-seq Normal all cell Male Gonad Han X, et al.; 32214235 HCL_GSE134355_FetalMaleGonad2 Normal Normal Human GSE134355 None 1 9853 Microwell-seq Normal all cell Male Gonad Han X, et al.; 32214235 HCL_GSE134355_FetalPancreas1 Normal Normal Human GSE134355 None 1 8977 Microwell-seq Normal all cell Pancreas Han X, et al.; 32214235 HCL_GSE134355_FetalPancreas2 Normal Normal Human GSE134355 None 1 6939 Microwell-seq Normal all cell Pancreas Han X, et al.; 32214235 HCL_GSE134355_FetalPancreas3 Normal Normal Human GSE134355 None 1 2830 Microwell-seq Normal all cell Pancreas Han X, et al.; 32214235 HCL_GSE134355_FetalRib2 Normal Normal Human GSE134355 None 1 1432 Microwell-seq Normal all cell Rib Han X, et al.; 32214235 HCL_GSE134355_FetalRib3 Normal Normal Human GSE134355 None 1 4560 Microwell-seq Normal all cell Rib Han X, et al.; 32214235 HCL_GSE134355_FetalSkin2 Normal Normal Human GSE134355 None 1 5294 Microwell-seq Normal all cell Skin Han X, et al.; 32214235 HCL_GSE134355_FetalSkin3 Normal Normal Human GSE134355 None 1 1697 Microwell-seq Normal all cell Skin Han X, et al.; 32214235 HCL_GSE134355_FetalSpinalCord1 Normal Normal Human GSE134355 None 1 5916 Microwell-seq Normal all cell Spinal Cord Han X, et al.; 32214235 HCL_GSE134355_FetalStomach1 Normal Normal Human GSE134355 None 1 1322 Microwell-seq Normal all cell Stomach Han X, et al.; 32214235 HCL_GSE134355_FetalStomach2 Normal Normal Human GSE134355 None 1 6631 Microwell-seq Normal all cell Stomach Han X, et al.; 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Nat Biotec...; 31061481 OC_GSE147082 Ovarian cancer OC Human GSE147082 None 6 9358 Illumina NextSeq 500 Normal all cell Ovarian Olalekan S, et al.; 34038734 OC_GSE150864 Ovarian cancer OC Human GSE150864 None 2 2775 Illumina NextSeq 500 Normal all cell Ovarian Barger CJ, et al.; 33890574 OC_GSE158937 Ovarian cancer OC Human GSE158937 None 3 8430 10X Genomics Normal all cell Ovarian Weber LM, et al.; 34553212 OC_GSE160753 Ovarian cancer OC Human GSE160753 immunotherapy 1 8000 Illumina NovaSeq 6000 Normal all cell Ovarian Wan C, et al.; 33158814 OC_GSE160754 Ovarian cancer OC Human GSE160754 immunotherapy 1 3751 Illumina NovaSeq 6000 Normal all cell Ovarian Wan C, et al.; 33158814 OV_GSE115007 Ovarian Serous Cystadenocarcinoma OV Human GSE115007 None 1 6000 10x Genomics Primary all cell Ovary Tang-Huau TL, et al. Nat Com...; 29967419 OV_GSE118828 Ovarian Serous Cystadenocarcinoma OV Human GSE118828 None 9 1909 Smart-seq2 Primary, Metastatic all cell Ovary Shih AJ, et al. PLoS One 2018; 30383866 PAAD_GSE112845 Pancreatic adenosquamous carcinoma PAAD KLM1 cell line GSE112845 None - 8321 10x Genomics - all cell Cell Line: KLM1 Chen J, et al. J Transl Med....; 30016977 PAAD_GSE165399 Pancreatic adenosquamous carcinoma PAAD Human GSE165399 None 3 9400 HiSeq X Ten Normal all cell Pancreas Zhao X, et al.; 34326696 PBMC_8K_10X Peripheral Blood Mononuclear Cell PBMC_8K_10X Human - None 1 8488 10x Genomics Normal all cell Peripheral blood -; - PC_GSE153892 Prostate cancer PC Human GSE153892 None 6 11360 Illumina NextSeq 500 Normal macrophages Prostate Masetti M, et al.; 34919143 PC_GSE157703 Prostate cancer PC Human GSE157703 None 2 7210 HiSeq X Ten Normal all cell Prostate Ma X, et al.; 33032611 PC_GSE176031 Prostate cancer PC Human GSE176031 None 15 9927 Illumina HiSeq 2000 Normal all cell Prostate Song H, et al.; 35013146 PC_GSE207006 Prostate cancer PC Human GSE207006 None 2 3725 Illumina HiSeq 4000 Normal blood cell Peripheral blood Kohada Y, et al.; - PDAC_GSE141017 Pancreatic ductal adenocarcinoma PDAC Human;Mouse GSE141017 None 3 6332 10X Genomics Normal all cell Pancreas Schlesinger Y, et al.; 32908137 PDAC_GSE156405 Pancreatic ductal adenocarcinoma PDAC Human GSE156405 None 19 11158 Illumina NextSeq 500 Pri and Meta all cell Pancreas;Vaginal apex;Liver;Lung;Peripheral blood Lee JJ, et al.; 34426439 PDAC_GSE158356 Pancreatic ductal adenocarcinoma PDAC Human;Mouse GSE158356 None 15 8038 10X Genomics Pri and Meta all cell Pancreas;Liver Kemp SB, et al.; 33782087 PD_GSE141578 Parkinsons disease PD Human GSE141578 None 15 8080 10X Genomics Normal immune cells Brain Gate D, et al.; 34648304 PD_GSE163323 Parkinsons disease PD Human GSE163323 None 2 7423 10x Genomics Normal iPSC-derived microglia cell Brain Langston RG, et al.; 35895835 PRAD_GSE99795 Prostate Adenocarcinoma PRAD LNCaP cell line GSE99795 None - 144 Smart-seq2 - malignant cell Cell Line: LNCaP Horning AM, et al. Cancer Re...; 29233929 SARC_GSE146221_CHLA10 Sarcoma SARC CHLA10 cell line GSE146221 None - 4632 10x Genomics - all cell Soft Tissue Miller HE, et al. Cancers; 32290418 SARC_GSE146221_CHLA9 Sarcoma SARC CHLA9 cell line GSE146221 None - 4865 10x Genomics - all cell Soft Tissue Miller HE, et al. Cancers; 32290418 SARC_GSE146221_TC71 Sarcoma SARC TC71 cell line GSE146221 None - 3673 10x Genomics - all cell Soft Tissue Miller HE, et al. Cancers; 32290418 SCLC_GSE150766 Small cell lung cancer SCLC Human GSE150766 Drug therapy 1 1875 10X Genomics Normal all cell Liver Olsen RR, et al.; 34016693 SKCM_GSE115978_aPD1 Skin Cutaneous Melanoma SKCM Human GSE115978GSE123813 Immunotherapy 31 7186 Smart-seq2 Primary, Metastatic all cell Skin Jerby-Arnon L, et al. Cell 2...; - SKCM_GSE72056 Skin Cutaneous Melanoma SKCM Human GSE72056 None 19 4645 Smart-seq2 Metastatic all cell Skin Tirosh I, et al. Science 2016; 27124452 SKCM_GSE81383 Skin Cutaneous Melanoma SKCM Human GSE81383 None 3 307 Illumina HiSeq 2500 Metastatic malignant cell Skin Gerber T, et al. Oncotarget....; 27903987 T2D_GSE135076 Type 2 diabetes T2D Human GSE135076 None 4 1254 Drop-seq Normal B cell Embryonic Ma Q, et al.; 35842441 TNBC_GSE118389 Triple negative breast cancer TNBC Human GSE118389 None 6 1534 Illumina Genome Analyzer Normal all cell Breast Karaayvaz M, et al.; 30181541 TNBC_GSE148673 Triple negative breast cancer TNBC Human GSE148673 None 5 8944 10x Genomics Primary all cell Brain -; 33462507