dataset name cell info cell cluster cell trajectory cell states disease TCGA species accession treatment patients cells platform pri / meta cell type organ publication
AAA_GSE166676Abdominal aortic aneurysmAAAHumanGSE166676None57734Illumina NovaSeq 6000Normalall cellAorticDavis FM, et al.; 33779682
ACC_GSE113660Adrenocortical CarcinomaACCRh41 cell lineGSE113660None-687510x Genomics-malignant cellCell Line: Rh41Chen W, et al. Genome Biol. ...; 29855333
AD_GSE198323Alzheimers diseaseADHumanGSE198323None62470NextSeq 550Normalall cellHippocampusZhou Y, et al.; 35794479
AEL_GSE142213Acute Erythroid LeukemiaAELHumanGSE142213None2399410x GenomicsPrimaryall cellBone marrowDi Genua C, et al. Cancer Ce...; 32330454
AML_GSE147989Acute Myeloid LeukemiaAMLHumanGSE147989Targeted therapy2738910x GenomicsPrimaryall cellBone marrow-; 32601337
AML_GSE205490Acute myeloid leukemiaAMLHumanGSE205490None2264310x GenomicsNormalmononuclear cellsBone marrowGuess T, et al.; 35522837
AS_GSE131778AtherosclerosisASHumanGSE131778None81175610x GenomicsNormalall cellHeartWirka RC, et al.; 31359001
BC_GSE146137Bladder cancerBCHuman;MouseGSE146137None83828Illumina NextSeq 500NormalCD45 cellBladderSfakianos JP, et al; 32439865
BLCA_GSE130001Bladder Urothelial CarcinomaBLCAHumanGSE130001None2412910x GenomicsPrimaryall cellBladderWang L, et al. Genome Med 2020; 32111252
BP_GSE167118_BALF_moderateBacterial pneumoniaBPHumanGSE167118None3556010x GenomicsModerateall cellBronchoalveolar lavage fluid of Moderate Bacterial pneumoniaZhao Z,et al.2021; 33622974
BP_GSE167118_BALF_noBacterial pneumoniaBPHumanGSE167118None1334910x GenomicsNoall cellBronchoalveolar lavage fluid of Bacterial pneumoniaZhao Z,et al.2021; 33622974
BP_GSE167118_blood_noBacterial pneumoniaBPHumanGSE167118None1698810x GenomicsNoall cellPeripheral blood of Bacterial pneumoniaZhao Z,et al.2021; 33622974
BRCA_GSE110686Breast Invasive CarcinomaBRCAHumanGSE110686None2603510x GenomicsPrimary, Metastaticall cellBreastSavas P, et al. Nat Med 2018; 29942092
BRCA_GSE138536Breast Invasive CarcinomaBRCAHumanGSE138536None81902Smart-seq2Primaryall cellBreastGulati GS, et al. Science 2020; 31974247
BRCA_GSE143423Breast Invasive CarcinomaBRCAHumanGSE143423None1437510x GenomicsMetastaticall cellBreastWeilin Jin, et al.; 10.1101/2019.12.30.890517
BRCA_GSE144320Breast cancerBRCAHumanGSE144320None1461410X GenomicsNormalMCF7 (MCF7 wild type and MCF7 with ESR1 Y537S mutation), T47D wild type, T47D with CDH1 knock out (CRISPR), MDA-MB-134-VI, SUM44-PE, BCK4, MCF10A, and HEK293Breast;Embryonic kidneyChen F, et al.; 33148662
BRCA_GSE158399_lymph_nodeBreast cancerBRCAHumanGSE158399None110879HiSeq X TenNormalall cellLymphXu K, et al.; 33564857
BRCA_GSE158399_primaryBreast cancerBRCAHumanGSE158399None110473HiSeq X TenPriall cellBreastXu K, et al.; 33564857
BRCA_GSE181812Breast cancerBRCAHumanGSE181812None3668810X Genomics;InDropNormalall cellBreastSemina SE, et al.; 35264224
BRCA_GSE75688Breast Invasive CarcinomaBRCAHumanGSE75688None11317Illumina HiSeq 2500Primarymalignant cellBreastChung W, et al. Nat Commun. ...; 28474673
BRCA_GSE77308Breast Invasive CarcinomaBRCAPatient-Derived tumor XenograftGSE77308None-369Smart-seq-malignant cellBreastBraune EB, et al. Stem Cell ...; 27066863
BRCA_SRP114962Breast Invasive CarcinomaBRCAHumanSRP114962Chemotherapy82472SNRSPrimaryall cellBreastKim C, et al. Cell 2018; 29681456
CAHD_GSE121893Coronary atherosclerotic heart disease and dilated cardiomyopathyCAHDHumanGSE121893None84933Illumina NextSeq 500Normalall cellHeartWang L, et al.; 31915373
CESC_ERP020478Cervical Squamous Cell CarcinomaCESCHela cell lineERP020478None-126Illumina HiSeq 4000-malignant cellCell Line: HelaAaron TL Lun, et al. Nucleic...; 29860520
CHOL_GSE125449_aPD1aPDL1aCTLA4CholangiocarcinomaCHOLHumanGSE125449_aPD1aPDL1aCTLA4Immunotherapy10576210x GenomicsPrimaryall cellLiverLichun Ma, et al. Cancer Cel...; 31588021
CML_GSE76312Chronic myeafterlogenous leukemiaCMLHumanGSE76312None11877Smart-seq2-malignant cellBone marrowGiustacchini A, et al. Nat M...; 28504724
CML_GSE98734Chronic myeafterlogenous leukemiaCMLK562 cell lineGSE98734None-267Illumina HiSeq 2500-malignant cellCell Line: K562Attar M, et al. Sci Rep. 2018; 29391536
COVID19_GSE167118_BALF_moderateCOVID-19COVID-19HumanGSE167118None2301610x GenomicsModerateall cellBronchoalveolar lavage fluid of Moderate COVID19 PatientZhao Z,et al.2021; 33622974
COVID19_GSE167118_blood_moderateCOVID-19COVID-19HumanGSE167118None1727010x GenomicsModerateall cellPeripheral blood of Moderate COVID19 PatientZhao Z,et al.2021; 33622974
COVID19_GSE168212COVID-19COVID-19HumanGSE168212None1493510x Genomics-all cellPeripheral bloodWang Y,et al.2021; -
COVID19_GSE169503COVID-19COVID-19HumanGSE169503None4419610x Genomics-all cellPeripheral bloodGangaev A, et al.; 33972535
CRC_GSE112865_mouse_aPD1Colorectal CancerCRCMouseGSE112865_aPD1Immunotherapy-445410x GenomicsPrimaryall cellCell line: MC38Arlauckas SP, et al. Therano...; 30613266
CRC_GSE120909_mouse_aPD1Colorectal CancerCRCMouseGSE120909_aPD1Immunotherapy-1881Smart-seqPrimaryall cellColorectalWang B, et al. Sci Immunol 2...; 30389797
CRC_GSE122969_mouse_aPD1aTIM3Colorectal CancerCRCMouseGSE122969_aPD1aTIM3Immunotherapy-545710x GenomicsPrimaryall cellColorectalKurtulus S, et al. Immunity ...; 30635236
CRC_GSE81861Colorectal CancerCRCHumanGSE81861None11290Illumina HiSeq 2000Primarymalignant cellColorectalLi H, et al. Nat Genet. 2017; 28319088
DLB_GSE141578Dementia with Lewy BodiesDLBHumanGSE141578None4198110x GenomicsNormalimmune cellsBrainGate D, et al.; 34648304
ESCA_GSE81812Esophageal CarcinomaESCAKYSE-180 cell lineGSE81812None-314Smart-seq-malignant cellCell Line: KYSE-180Ling Yang, et al. Cancer Let...; 29410067
GBM_GSE131928_Smartseq2Glioblastoma MultiformeGBMHumanGSE131928_Smartseq2None287930Smart-seq2Primaryall cellBrainNeftel C, et al. Cell 2019; 31327527
GBM_GSE57872_CellLineGlioblastoma MultiformeGBMGSC/DGC cell lineGSE57872None-177Smart-seq-malignant cellCell Line: GSC/DGCPatel AP, et al. Science. 2014; 24925914
GBM_GSE57872_tissueGlioblastoma MultiformeGBMHumanGSE57872None5508Smart-seqPrimarymalignant cellBrainPatel AP, et al. Science. 2014; 24925914
GBM_GSE84465Glioblastoma MultiformeGBMHumanGSE84465None43533Smart-seq2Primaryall cellBrainDarmanis S, et al. Cell Rep ...; 29091775
GC_GSE163558_primaryGastric cancerGCHumanGSE163558None611677Illumina NovaSeq 6000Priall cellGastricJiang H, et al.; 35184420
Glioma_GSE129671GliomaGliomaHumanGSE129671None43945Illumina NextSeq 500;Illumina NovaSeq 6000 Normalall cellBrainZhao W, et al.; -
Glioma_GSE158175GliomaGliomaHuman;MouseGSE158175None29224Illumina NovaSeq 6000Priall cellBrainLiu C, et al.; -
Glioma_GSE163108GliomaGliomaHumanGSE163108None318252Smart-Seq2;10X GenomicsNormalT cellBrainMathewson ND, et al.; 33592174
HCL_GSE134355_AdultAdipose1NormalNormalHumanGSE134355None11372Microwell-seqNormalall cellAdiposeHan X, et al.; 32214235
HCL_GSE134355_AdultAdrenalGland2NormalNormalHumanGSE134355None18114Microwell-seqNormalall cellAdrenal GlandHan X, et al.; 32214235
HCL_GSE134355_AdultArtery1NormalNormalHumanGSE134355None19652Microwell-seqNormalall cellArteryHan X, et al.; 32214235
HCL_GSE134355_AdultAscendingColon1NormalNormalHumanGSE134355None12026Microwell-seqNormalall cellColonHan X, et al.; 32214235
HCL_GSE134355_AdultBladder1NormalNormalHumanGSE134355None11267Microwell-seqNormalall cellBladderHan X, et al.; 32214235
HCL_GSE134355_AdultBladder2NormalNormalHumanGSE134355None12750Microwell-seqNormalall cellBladderHan X, et al.; 32214235
HCL_GSE134355_AdultBoneMarrow1NormalNormalHumanGSE134355None12261Microwell-seqNormalall cellBone MarrowHan X, et al.; 32214235
HCL_GSE134355_AdultBoneMarrow2NormalNormalHumanGSE134355None16443Microwell-seqNormalall cellBone MarrowHan X, et al.; 32214235
HCL_GSE134355_AdultCerebellum1NormalNormalHumanGSE134355None17324Microwell-seqNormalall cellCerebellumHan X, et al.; 32214235
HCL_GSE134355_AdultCervix1NormalNormalHumanGSE134355None18096Microwell-seqNormalall cellCervixHan X, et al.; 32214235
HCL_GSE134355_AdultDuodenum1NormalNormalHumanGSE134355None14681Microwell-seqNormalall cellDuodenumHan X, et al.; 32214235
HCL_GSE134355_AdultEpityphlon1NormalNormalHumanGSE134355None14486Microwell-seqNormalall cellEpityphlonHan X, et al.; 32214235
HCL_GSE134355_AdultEsophagus1NormalNormalHumanGSE134355None12696Microwell-seqNormalall cellEsophagusHan X, et al.; 32214235
HCL_GSE134355_AdultEsophagus2NormalNormalHumanGSE134355None18668Microwell-seqNormalall cellEsophagusHan X, et al.; 32214235
HCL_GSE134355_AdultFallopiantube1NormalNormalHumanGSE134355None16556Microwell-seqNormalall cellFallopiantubeHan X, et al.; 32214235
HCL_GSE134355_AdultGallbladder1NormalNormalHumanGSE134355None19769Microwell-seqNormalall cellGallbladderHan X, et al.; 32214235
HCL_GSE134355_AdultGallbladder2NormalNormalHumanGSE134355None15031Microwell-seqNormalall cellGallbladderHan X, et al.; 32214235
HCL_GSE134355_AdultHeart1NormalNormalHumanGSE134355None11308Microwell-seqNormalall cellHeartHan X, et al.; 32214235
HCL_GSE134355_AdultHeart2NormalNormalHumanGSE134355None11478Microwell-seqNormalall cellHeartHan X, et al.; 32214235
HCL_GSE134355_AdultIleum2NormalNormalHumanGSE134355None13367Microwell-seqNormalall cellJejunumHan X, et al.; 32214235
HCL_GSE134355_AdultJejunum2NormalNormalHumanGSE134355None15549Microwell-seqNormalall cellKidneyHan X, et al.; 32214235
HCL_GSE134355_AdultKidney2NormalNormalHumanGSE134355None19153Microwell-seqNormalall cellKidneyHan X, et al.; 32214235
HCL_GSE134355_AdultKidney3NormalNormalHumanGSE134355None19966Microwell-seqNormalall cellKidneyHan X, et al.; 32214235
HCL_GSE134355_AdultKidney4NormalNormalHumanGSE134355None13849Microwell-seqNormalall cellKidneyHan X, et al.; 32214235
HCL_GSE134355_AdultLiver1NormalNormalHumanGSE134355None11811Microwell-seqNormalall cellLiverHan X, et al.; 32214235
HCL_GSE134355_AdultLiver2NormalNormalHumanGSE134355None14377Microwell-seqNormalall cellLiverHan X, et al.; 32214235
HCL_GSE134355_AdultLiver4NormalNormalHumanGSE134355None14384Microwell-seqNormalall cellLiverHan X, et al.; 32214235
HCL_GSE134355_AdultLung1NormalNormalHumanGSE134355None18426Microwell-seqNormalall cellLungHan X, et al.; 32214235
HCL_GSE134355_AdultLung2NormalNormalHumanGSE134355None16022Microwell-seqNormalall cellLungHan X, et al.; 32214235
HCL_GSE134355_AdultLung3NormalNormalHumanGSE134355None19603Microwell-seqNormalall cellLungHan X, et al.; 32214235
HCL_GSE134355_AdultMuscle1NormalNormalHumanGSE134355None17775Microwell-seqNormalall cellMuscleHan X, et al.; 32214235
HCL_GSE134355_AdultOmentum1NormalNormalHumanGSE134355None11487Microwell-seqNormalall cellOmentumHan X, et al.; 32214235
HCL_GSE134355_AdultOmentum2NormalNormalHumanGSE134355None19971Microwell-seqNormalall cellOmentumHan X, et al.; 32214235
HCL_GSE134355_AdultOmentum3NormalNormalHumanGSE134355None11354Microwell-seqNormalall cellOmentumHan X, et al.; 32214235
HCL_GSE134355_AdultPancreas1NormalNormalHumanGSE134355None19727Microwell-seqNormalall cellPancreasHan X, et al.; 32214235
HCL_GSE134355_AdultPeripheralBlood1NormalNormalHumanGSE134355None12719Microwell-seqNormalall cellPeripheral BloodHan X, et al.; 32214235
HCL_GSE134355_AdultPeripheralBlood2NormalNormalHumanGSE134355None15296Microwell-seqNormalall cellPeripheral BloodHan X, et al.; 32214235
HCL_GSE134355_AdultPeripheralBlood3NormalNormalHumanGSE134355None12156Microwell-seqNormalall cellPeripheral BloodHan X, et al.; 32214235
HCL_GSE134355_AdultPeripheralBlood4NormalNormalHumanGSE134355None17160Microwell-seqNormalall cellPeripheral BloodHan X, et al.; 32214235
HCL_GSE134355_AdultProstate1NormalNormalHumanGSE134355None12445Microwell-seqNormalall cellProstateHan X, et al.; 32214235
HCL_GSE134355_AdultRectum1NormalNormalHumanGSE134355None15718Microwell-seqNormalall cellRectumHan X, et al.; 32214235
HCL_GSE134355_AdultSigmoidColon1NormalNormalHumanGSE134355None13281Microwell-seqNormalall cellColonHan X, et al.; 32214235
HCL_GSE134355_AdultStomach1NormalNormalHumanGSE134355None11879Microwell-seqNormalall cellStomachHan X, et al.; 32214235
HCL_GSE134355_AdultStomach2NormalNormalHumanGSE134355None14669Microwell-seqNormalall cellStomachHan X, et al.; 32214235
HCL_GSE134355_AdultStomach3NormalNormalHumanGSE134355None18076Microwell-seqNormalall cellStomachHan X, et al.; 32214235
HCL_GSE134355_AdultTemporalLobe1NormalNormalHumanGSE134355None19544Microwell-seqNormalall cellLobeHan X, et al.; 32214235
HCL_GSE134355_AdultThyroid1NormalNormalHumanGSE134355None16319Microwell-seqNormalall cellThyroidHan X, et al.; 32214235
HCL_GSE134355_AdultThyroid2NormalNormalHumanGSE134355None16328Microwell-seqNormalall cellThyroidHan X, et al.; 32214235
HCL_GSE134355_AdultTrachea2NormalNormalHumanGSE134355None19949Microwell-seqNormalall cellTracheaHan X, et al.; 32214235
HCL_GSE134355_AdultTransverseColon1NormalNormalHumanGSE134355None15765Microwell-seqNormalall cellColonHan X, et al.; 32214235
HCL_GSE134355_AdultUreter1NormalNormalHumanGSE134355None12390Microwell-seqNormalall cellUreterHan X, et al.; 32214235
HCL_GSE134355_AdultUterus1NormalNormalHumanGSE134355None17694Microwell-seqNormalall cellUreterHan X, et al.; 32214235
HCL_GSE134355_ChorionicVillus1NormalNormalHumanGSE134355None19898Microwell-seqNormalall cellChorionic VillusHan X, et al.; 32214235
HCL_GSE134355_CordBlood1NormalNormalHumanGSE134355None12150Microwell-seqNormalall cellCord BloodHan X, et al.; 32214235
HCL_GSE134355_CordBlood2NormalNormalHumanGSE134355None14444Microwell-seqNormalall cellCord BloodHan X, et al.; 32214235
HCL_GSE134355_CordBloodCD34P1NormalNormalHumanGSE134355None15607Microwell-seqNormalall cellCord Blood CD34Han X, et al.; 32214235
HCL_GSE134355_FetalAdrenalGland2NormalNormalHumanGSE134355None19875Microwell-seqNormalall cellAdrenal GlandHan X, et al.; 32214235
HCL_GSE134355_FetalAdrenalGland3NormalNormalHumanGSE134355None12547Microwell-seqNormalall cellAdrenal GlandHan X, et al.; 32214235
HCL_GSE134355_FetalAdrenalGland4NormalNormalHumanGSE134355None11994Microwell-seqNormalall cellAdrenal GlandHan X, et al.; 32214235
HCL_GSE134355_FetalBrain3NormalNormalHumanGSE134355None12904Microwell-seqNormalall cellBrainHan X, et al.; 32214235
HCL_GSE134355_FetalBrain4NormalNormalHumanGSE134355None13920Microwell-seqNormalall cellBrainHan X, et al.; 32214235
HCL_GSE134355_FetalBrain5NormalNormalHumanGSE134355None15096Microwell-seqNormalall cellBrainHan X, et al.; 32214235
HCL_GSE134355_FetalBrain6NormalNormalHumanGSE134355None11705Microwell-seqNormalall cellBrainHan X, et al.; 32214235
HCL_GSE134355_FetalCalvaria1NormalNormalHumanGSE134355None15129Microwell-seqNormalall cellCalvariaHan X, et al.; 32214235
HCL_GSE134355_FetalEyes1NormalNormalHumanGSE134355None11880Microwell-seqNormalall cellEyeHan X, et al.; 32214235
HCL_GSE134355_FetalFemaleGonad1NormalNormalHumanGSE134355None12710Microwell-seqNormalall cellFemale GonadHan X, et al.; 32214235
HCL_GSE134355_FetalFemaleGonad2NormalNormalHumanGSE134355None14231Microwell-seqNormalall cellFemale GonadHan X, et al.; 32214235
HCL_GSE134355_FetalHeart1NormalNormalHumanGSE134355None15319Microwell-seqNormalall cellHeartHan X, et al.; 32214235
HCL_GSE134355_FetalHeart2NormalNormalHumanGSE134355None12678Microwell-seqNormalall cellHeartHan X, et al.; 32214235
HCL_GSE134355_FetalIntestine1NormalNormalHumanGSE134355None11448Microwell-seqNormalall cellIntestineHan X, et al.; 32214235
HCL_GSE134355_FetalIntestine2NormalNormalHumanGSE134355None11338Microwell-seqNormalall cellIntestineHan X, et al.; 32214235
HCL_GSE134355_FetalIntestine3NormalNormalHumanGSE134355None19740Microwell-seqNormalall cellIntestineHan X, et al.; 32214235
HCL_GSE134355_FetalIntestine4NormalNormalHumanGSE134355None16931Microwell-seqNormalall cellIntestineHan X, et al.; 32214235
HCL_GSE134355_FetalIntestine5NormalNormalHumanGSE134355None14059Microwell-seqNormalall cellIntestineHan X, et al.; 32214235
HCL_GSE134355_FetalKidney3NormalNormalHumanGSE134355None14939Microwell-seqNormalall cellKidneyHan X, et al.; 32214235
HCL_GSE134355_FetalKidney4NormalNormalHumanGSE134355None14734Microwell-seqNormalall cellKidneyHan X, et al.; 32214235
HCL_GSE134355_FetalKidney5NormalNormalHumanGSE134355None19932Microwell-seqNormalall cellKidneyHan X, et al.; 32214235
HCL_GSE134355_FetalKidney6NormalNormalHumanGSE134355None13057Microwell-seqNormalall cellKidneyHan X, et al.; 32214235
HCL_GSE134355_FetalLung1NormalNormalHumanGSE134355None14526Microwell-seqNormalall cellLungHan X, et al.; 32214235
HCL_GSE134355_FetalLung2NormalNormalHumanGSE134355None15121Microwell-seqNormalall cellLungHan X, et al.; 32214235
HCL_GSE134355_FetalMaleGonad1NormalNormalHumanGSE134355None13358Microwell-seqNormalall cellMale GonadHan X, et al.; 32214235
HCL_GSE134355_FetalMaleGonad2NormalNormalHumanGSE134355None19853Microwell-seqNormalall cellMale GonadHan X, et al.; 32214235
HCL_GSE134355_FetalPancreas1NormalNormalHumanGSE134355None18977Microwell-seqNormalall cellPancreasHan X, et al.; 32214235
HCL_GSE134355_FetalPancreas2NormalNormalHumanGSE134355None16939Microwell-seqNormalall cellPancreasHan X, et al.; 32214235
HCL_GSE134355_FetalPancreas3NormalNormalHumanGSE134355None12830Microwell-seqNormalall cellPancreasHan X, et al.; 32214235
HCL_GSE134355_FetalRib2NormalNormalHumanGSE134355None11432Microwell-seqNormalall cellRibHan X, et al.; 32214235
HCL_GSE134355_FetalRib3NormalNormalHumanGSE134355None14560Microwell-seqNormalall cellRibHan X, et al.; 32214235
HCL_GSE134355_FetalSkin2NormalNormalHumanGSE134355None15294Microwell-seqNormalall cellSkinHan X, et al.; 32214235
HCL_GSE134355_FetalSkin3NormalNormalHumanGSE134355None11697Microwell-seqNormalall cellSkinHan X, et al.; 32214235
HCL_GSE134355_FetalSpinalCord1NormalNormalHumanGSE134355None15916Microwell-seqNormalall cellSpinal CordHan X, et al.; 32214235
HCL_GSE134355_FetalStomach1NormalNormalHumanGSE134355None11322Microwell-seqNormalall cellStomachHan X, et al.; 32214235
HCL_GSE134355_FetalStomach2NormalNormalHumanGSE134355None16631Microwell-seqNormalall cellStomachHan X, et al.; 32214235
HCL_GSE134355_FetalThymus1NormalNormalHumanGSE134355None12448Microwell-seqNormalall cellThymusHan X, et al.; 32214235
HCL_GSE134355_FetalThymus2NormalNormalHumanGSE134355None12068Microwell-seqNormalall cellThymusHan X, et al.; 32214235
HCL_GSE134355_hESC1NormalNormalHumanGSE134355None11660Microwell-seqNormalall cellEarly embryo/Primitive gonadHan X, et al.; 32214235
HCL_GSE134355_NeonatalAdrenalGland1NormalNormalHumanGSE134355None15863Microwell-seqNormalall cellAdrenal GlandHan X, et al.; 32214235
HCL_GSE134355_Placenta1NormalNormalHumanGSE134355None19595Microwell-seqNormalall cellPlacentaHan X, et al.; 32214235
HIV_GSE202410People with HIV on antiretroviral therapyHIVHumanGSE202410None1110790Illumina HiSeq 4000Normalall cellBlood;CSFFarhadian SF, et al.; 35801589
HLHS_GSE138979Hypoplastic left heart syndromeHLHSHumanGSE138979None687010X GenomicsNormalendocardial cellHeartMiao Y, et al.; 32810435
HNSC_GSE103322Head and Neck Squamous Cell CarcinomaHNSCHumanGSE103322None185902Smart-seq2Primaryall cellHead and neckPuram SV, et al. Cell 2018; 29198524
HPB_GSE163678Human pleuropulmonary blastomaHPBHumanGSE163678None11038910X GenomicsNormalall cellLungChen Z, et al.; -
KIRC_GSE171306Kidney Renal Clear Cell CarcinomaKIRCHumanGSE171306None365910X GenomicsNormalall cellRenalYu Z, et al.; 34168986
KIRC_GSE73121Kidney Renal Clear Cell CarcinomaKIRCPatient-Derived tumor XenograftGSE73121None-118Illumina HiSeq 2500Metastaticall cellKidney/PDXKim KT, et al. Genome Biol. ...; 27139883
LC_GSE111896Lung cancerLCHumanGSE111896None3865210X GenomicsNormalT cellsLungClarke J, et al.; 31227543
LGG_GSE102130Brain Lower Grade GliomaLGGHumanGSE102130None64058Smart-seq2Primaryall cellBrainFilbin MG, et al. Science 2018; 29674595
LGG_GSE141982Brain Lower Grade GliomaLGGHumanGSE141982None2526110x GenomicsPrimaryall cellBrainWang L, et al. Bioinformatic...; 32105316
LGG_GSE70630Brain Lower Grade GliomaLGGHumanGSE70630None64347Smart-seq2Primaryall cellBrainTirosh I, et al. Nature 2016; 27806376
LGG_GSE89567Brain Lower Grade GliomaLGGHumanGSE89567None106341Smart-seq2Primaryall cellBrainVenteicher AS, et al. Scienc...; 28360267
LIHC_GSE107747Liver Hepatocellular CarcinomaLIHCHumanGSE107747None2995010x GenomicsPrimarymalignant cellPeripheral bloodD.Avola D, et al.; 30068984
LIHC_GSE125449Liver cancerLCHumanGSE125449None19855110X GenomicsPriall cellLiverMa L, et al.; 31588021
LIHC_GSE125449_aPDL1aCTLA4Liver Hepatocellular CarcinomaLIHCHumanGSE125449_aPDL1aCTLA4Immunotherapy9383510x GenomicsPrimaryall cellLiverMa L, et al.Cancer Cell 2019; 31588021
LIHC_GSE140228_Smartseq2Liver Hepatocellular CarcinomaLIHCHumanGSE140228_Smartseq2None67074Smart-seq2Primaryall cellLiverZhang Q, et al. Cell 2019; 31675496
LIHC_GSE146115Liver cancerLCHumanGSE146115None42970HiSeq X TenNormalall cellLiverSu X, et al; 33531041
LIHC_GSE173671Liver cancerLCHumanGSE173671Drug therapy2659Illumina NovaSeq 6000Normalimmune cellsLiverCrouchet E, et al.; 34535664
LIHC_GSE98638Liver Hepatocellular CarcinomaLIHCHumanGSE98638None65059Smart-seq2Primaryall cellLiverZheng C, et al. Cell 2017; 28622514
LUAD_DRP001358Lung AdenocarcinomaLUADLC-2/ad cell lineDRP001358None-245Illumina HiSeq 2500-malignant cellCell Line: LC-2/adSuzuki A, et al. Genome Biol...; 25887790
LUAD_DRP003337Lung AdenocarcinomaLUADA549 cell lineDRP003337None-218Illumina HiSeq 2500-malignant cellCell Line: A549Tsukasa Kouno, et al.Nat Com...; 30664627
LUAD_GSE69405Lung AdenocarcinomaLUADPatient-Derived tumor XenograftGSE69405drug treated-126Illumina HiSeq 2500-malignant cellPDXKim KT, et al. Genome Biol. ...; 26084335
MB_GSE119926MedulloblastomaMBHumanGSE119926None257745Smart-seq2Primary, Metastaticall cellBrainPDXHovestadt V, et al. Nature 2...; 31341285
Melanoma_GSE115978MelanomaMELHumanGSE115978None317186SMART-Seq2Normalall cellSkinJerby-Arnon L, et al.; 30388455
Melanoma_GSE116237MelanomaMELHumanGSE116237Targeted therapy1674SMARTseq2Normalmalignant cellsSkinRambow F, et al.; 30017245
Melanoma_GSE176029MelanomaMELHumanGSE176029None28719Illumina NovaSeq 6000Metaall cellLiverLin W, et al.; 34470851
MEL_GSE157743MelanomaMELHumanGSE157743None22102Smart-seq2Primaryall cellPeripheral bloodHong X, et al.Cancer Discov....; 33203734
MEL_GSE99330MelanomaMELWM989 cell lineGSE99330None-575Drop-seq-malignant cellCell Line: WM989Torre E, et al. Cell Syst. 2...; 29454938
MM_GSE110499_10XAcute Myeloid LeukemiaAMLHumanGSE110499None3118410x GenomicsPrimaryall cellBone marrowFan J, et al. Genome Res. 2018; 29898899
MM_GSE110499_SmartAcute Myeloid LeukemiaAMLHumanGSE110499None3169Smart-seqPrimaryall cellBone marrowFan J, et al. Genome Res. 2018; 29898899
NET_GSE140312Neuroendocrine TumorNETHumanGSE140312None1315810x GenomicsPrimary, Metastaticall cellSmall intestine(primary)/Liver(metastatic)Rao M, et al. Cold Spring Ha...; 32054662
NSCLC_DRP003981Lung AdenocarcinomaLUADPC-9 cell lineDRP003981None-164Illumina HiSeq 2500-malignant cellCell Line: PC-9Yukie Kashima, et al. Scient...; 29472726
NSCLC_GSE127471Non-small Cell Lung CancerNSCLCHumanGSE127471None1110810x GenomicsPrimaryall cellPeripheral bloodNewman AM, et al. Nat Biotec...; 31061481
OC_GSE147082Ovarian cancerOCHumanGSE147082None69358Illumina NextSeq 500Normalall cellOvarianOlalekan S, et al.; 34038734
OC_GSE150864Ovarian cancerOCHumanGSE150864None22775Illumina NextSeq 500Normalall cellOvarianBarger CJ, et al.; 33890574
OC_GSE158937Ovarian cancerOCHumanGSE158937None3843010X GenomicsNormalall cellOvarianWeber LM, et al.; 34553212
OC_GSE160753Ovarian cancerOCHumanGSE160753immunotherapy18000Illumina NovaSeq 6000Normalall cellOvarianWan C, et al.; 33158814
OC_GSE160754Ovarian cancerOCHumanGSE160754immunotherapy13751Illumina NovaSeq 6000Normalall cellOvarianWan C, et al.; 33158814
OV_GSE115007Ovarian Serous CystadenocarcinomaOVHumanGSE115007None1600010x GenomicsPrimaryall cellOvaryTang-Huau TL, et al. Nat Com...; 29967419
OV_GSE118828Ovarian Serous CystadenocarcinomaOVHumanGSE118828None91909Smart-seq2Primary, Metastaticall cellOvaryShih AJ, et al. PLoS One 2018; 30383866
PAAD_GSE112845Pancreatic adenosquamous carcinomaPAADKLM1 cell lineGSE112845None-832110x Genomics-all cellCell Line: KLM1Chen J, et al. J Transl Med....; 30016977
PAAD_GSE165399Pancreatic adenosquamous carcinomaPAADHumanGSE165399None39400HiSeq X TenNormalall cellPancreasZhao X, et al.; 34326696
PBMC_8K_10XPeripheral Blood Mononuclear CellPBMC_8K_10XHuman-None1848810x GenomicsNormalall cellPeripheral blood-; -
PC_GSE153892Prostate cancerPCHumanGSE153892None611360Illumina NextSeq 500Normalmacrophages ProstateMasetti M, et al.; 34919143
PC_GSE157703Prostate cancerPCHumanGSE157703None27210HiSeq X TenNormalall cellProstateMa X, et al.; 33032611
PC_GSE176031Prostate cancerPCHumanGSE176031None159927Illumina HiSeq 2000Normalall cellProstateSong H, et al.; 35013146
PC_GSE207006Prostate cancerPCHumanGSE207006None23725Illumina HiSeq 4000Normalblood cellPeripheral bloodKohada Y, et al.; -
PDAC_GSE141017Pancreatic ductal adenocarcinomaPDACHuman;MouseGSE141017None3633210X GenomicsNormalall cellPancreasSchlesinger Y, et al.; 32908137
PDAC_GSE156405Pancreatic ductal adenocarcinomaPDACHumanGSE156405None1911158Illumina NextSeq 500Pri and Metaall cellPancreas;Vaginal apex;Liver;Lung;Peripheral bloodLee JJ, et al.; 34426439
PDAC_GSE158356Pancreatic ductal adenocarcinomaPDACHuman;MouseGSE158356None15803810X GenomicsPri and Metaall cellPancreas;LiverKemp SB, et al.; 33782087
PD_GSE141578Parkinsons diseasePDHumanGSE141578None15808010X GenomicsNormalimmune cellsBrainGate D, et al.; 34648304
PD_GSE163323Parkinsons diseasePDHumanGSE163323None2742310x GenomicsNormaliPSC-derived microglia cellBrainLangston RG, et al.; 35895835
PRAD_GSE99795Prostate AdenocarcinomaPRADLNCaP cell lineGSE99795None-144Smart-seq2-malignant cellCell Line: LNCaPHorning AM, et al. Cancer Re...; 29233929
SARC_GSE146221_CHLA10SarcomaSARCCHLA10 cell lineGSE146221None-463210x Genomics-all cellSoft TissueMiller HE, et al. Cancers; 32290418
SARC_GSE146221_CHLA9SarcomaSARCCHLA9 cell lineGSE146221None-486510x Genomics-all cellSoft TissueMiller HE, et al. Cancers; 32290418
SARC_GSE146221_TC71SarcomaSARCTC71 cell lineGSE146221None-367310x Genomics-all cellSoft TissueMiller HE, et al. Cancers; 32290418
SCLC_GSE150766Small cell lung cancerSCLCHumanGSE150766Drug therapy1187510X GenomicsNormalall cellLiverOlsen RR, et al.; 34016693
SKCM_GSE115978_aPD1Skin Cutaneous MelanomaSKCMHumanGSE115978GSE123813Immunotherapy317186Smart-seq2Primary, Metastaticall cellSkinJerby-Arnon L, et al. Cell 2...; -
SKCM_GSE72056Skin Cutaneous MelanomaSKCMHumanGSE72056None194645Smart-seq2Metastaticall cellSkinTirosh I, et al. Science 2016; 27124452
SKCM_GSE81383Skin Cutaneous MelanomaSKCMHumanGSE81383None3307Illumina HiSeq 2500Metastaticmalignant cellSkinGerber T, et al. Oncotarget....; 27903987
T2D_GSE135076Type 2 diabetesT2DHumanGSE135076None41254Drop-seqNormalB cellEmbryonicMa Q, et al.; 35842441
TNBC_GSE118389Triple negative breast cancerTNBCHumanGSE118389None61534Illumina Genome AnalyzerNormalall cellBreastKaraayvaz M, et al.; 30181541
TNBC_GSE148673Triple negative breast cancerTNBCHumanGSE148673None5894410x GenomicsPrimaryall cellBrain-; 33462507