miRNA	Freq	Target	Pathway
miR-124	34
miR-155	27
miR-146a	17
miR-21	8
let-7a	7
miR-124-3p	6
miR-223	6
miR-146a-5p	5
miR-181c	5
miR-221	5
miR-9	5
miR-34a	4
miR-125b	3
miR-181a	3
miR-195	3
miR-200b	3
miR-222	3
miR-26a	3
miR-29b	3
miR-93	3
miR-98	3
let-7b	2
let-7c-5p	2
miR-101	2
miR-135a-5p	2
miR-138	2
miR-142-3p	2
miR-143	2
miR-144	2
miR-150	2
miR-155-5p	2
miR-15a	2
miR-17	2
miR-204	2
miR-21-5p	2
miR-210	2
miR-214-5p	2
miR-223-5p	2
miR-24-3p	2
miR-30a-5p	2
miR-32-5p	2
miR-367	2
miR-429	2
miR-451	2
miR-7	2
H19	6
MALAT1	6
XIST	5
lincRNA-Cox2	3
NEAT1	3
SNHG1	3
SNHG14	3
FIRRE	2
GAS5	2
HOXA11-AS	2
MEG3	2
SNHG15	2
SNHG5	2
SNHG8	2
TUG1	2
circPTK2	2

Pathway	counts
NF-kappaB pathway	25
JAK-STAT pathway	6
Notch pathway	3
IKK-beta/NF-kappaB pathway	3
Wnt/beta-catenin pathway	3
MyD88/NF-kappaB pathway	2
PI3K/AKT pathway	2
TLR4/NF-kappaB pathway	2
MAPK pathway	2
CX3CL1 and CX3CR1 pathway	2
STAT3 pathway	2

Model	counts
Spinal cord injury (SCI)	29
Parkinson disease (PD)	20
Intracerebral hemorrhage (ICH)	19
Oxygen-glucose deprivation (OGD)	17
Chronic constriction injury (CCI)	17
Traumatic brain injury (TBI)	13
Middle cerebral artery occlusion (MCAO)	13
Alzheimer disease (AD)	13
Ischemic stroke	12
Japanese encephalitis virus (JEV) infection	9
Cerebral Ischemia/reperfusion injury	7
Ischemia reperfusion (I/R)	6
Multiple sclerosis (MS)	6
Depression	5
Unconjugated bilirubin (UCB)	5
Subarachnoid hemorrhage (SAH)	4
Oxygen-glucose deprivation (OGD)/reoxygenation (OGD/R)	4
Epilepsy	4
Acute Ischemic stroke (AIS)	4
Postoperative cognitive dysfunction (POCD)	3
Middle cerebral artery occlusion/reperfusion (MCAO/R)	3
Experimental Autoimmune Encephalomyelitis (EAE)	3
Amyotrophic lateral sclerosis (ALS)	3
Propofol treatment	3
HIV-1 infection	3
Temporal lobe epilepsy (TLE)	2
Bilateral Chronic constriction injury (bCCI)	2
Diabetic retinopathy (DR)	2
Cocaine treatment	2
Major depressive disorder (MDD)	2
Repetitive mild traumatic brain injury (rmTBI)	2
Vinyl sulfone (VS) treatment	2
Hypoxic-Ischemic encephalopathy (HIE)	2
Spinal nerve ligation (SNL)	2
Dexmedetomidine (DEX) treatment	2

GSEid	GPL	Species	RNA	Sample	Group_1	Group_2	Group_3	Details
GSE34614	GPL10344	Rattus norvegicus	miRNA	13	cell type		neuron/microglia	cell_type: neurons and microglia(3vs3)
					cell type		astrocytes/microglia	cell_type: astrocytes and microglia(4vs3)
					cell type		oligodendrocytes/microglia	cell_type: oligodendrocytes and microglia(3vs3)
GSE35706	GPL15216	Mus musculus	miRNA	12	treatment	virus infection	RABV/mock	treatment: CVS11 and mock(8vs8)
					treatment	virus infection	RABV12h/mock12h	time: 12 CVS11 and mock(2vs2)
					treatment	virus infection	RABV24h/mock24h	time: 24 CVS11 and mock(4vs4)
					treatment	virus infection	RABV48h/mock48h	time: 48 CVS11 and mock(2vs2)
					treatment	virus infection	RABV12h/RABV24h	treatment: CVS11 12 and 24(2vs4)
					treatment	virus infection	RABV12h/RABV48h	treatment: CVS11 12 and 48(2vs2)
					treatment	virus infection	RABV24h/RABV48h	treatment: CVS11 24 and 48(4vs2)
GSE48579	GPL17873	Mus musculus	miRNA	20	cell type		microglia/macrophage	cell_type: microglia and macrophage(9vs7)
					cell type		microglia/neuron	cell_type: microglia and PrimaryNeuron(9vs4)
GSE49330	GPL14613	Mus musculus	miRNA	9	treatment	microglia polarized	IL4/LPS	stimulation: IL4 and LPS(3vs3)
					treatment	microglia polarized	IL4/PBS	stimulation: IL4 and PBS(3vs3)
					treatment	microglia polarized	LPS/PBS	stimulation: LPS and PBS(3vs3)
GSE57410	GPL16384	Homo sapiens	miRNA	18	treatment	virus infection	JEV/mock	treatment: JEV and mock(9vs9)
					treatment	virus infection	JEV6h/mock6h	time: 6h JEV and mock(3vs3)
					treatment	virus infection	JEV24h/mock24h	time: 24h JEV and mock(3vs3)
					treatment	virus infection	JEV48h/mock48h	time: 48h JEV and mock(3vs3)
					treatment	virus infection	JEV6h/JEV24h	treatment: JEV 6h and 24h(3vs3)
					treatment	virus infection	JEV6h/JEV48h	treatment: JEV 6h and 48h(3vs3)
					treatment	virus infection	JEV24h/JEV48h	treatment: JEV 24h and 48h(3vs3)
GSE98143	GPL17912	Mus musculus	miRNA	6	cell type		microglia/macrophage	cell_type: microglia and macrophages(2vs4)
GSE122663	GPL16331	Mus musculus	miRNA	18	disease		control/AD	strain: B6C3F1 and P301S (PS19)(8vs10)
					Sex		male/female	sex: B6C3F1 Male and Female(4vs4)
					Sex		Admale/Adfemale	sex: P301S (PS19) Male and Female(5vs5)
GSE123262	GPL17021	Mus musculus	miRNA	18	treatment	immunosuppress	CBD/CBD_LPS	treatment: CBD and CBD_LPS(3vs3)
					treatment	immunosuppress	THC/THC_LPS	treatment: THC and THC_LPS(3vs3)
					treatment	immunosuppress	CBD/control	treatment: CBD and Ctrl(3vs3)
					treatment	immunosuppress	CBD/LPS	treatment: CBD and LPS(3vs3)
					treatment	immunosuppress	CBD/THC	treatment: CBD and THC(3vs3)
					treatment	immunosuppress	control/LPS	treatment: Ctrl and LPS(3vs3)
					treatment	immunosuppress	control/THC	treatment: Ctrl and THC(3vs3)
					treatment	immunosuppress	LPS/THC	treatment: LPS and THC(3vs3)
					treatment	immunosuppress	CBD_LPS/THC_LPS	treatment: CBD_LPS and THC_LPS(3vs3)
GSE133997	GPL21265	Mus musculus	miRNA	12	treatment	brain injury	control/rmTBI	treatment: control and rmTBI(3vs9)
					treatment	brain injury	rmTBI3d/rmTBI14d	time: rmTBI 3d and 14d(3vs3)
					treatment	brain injury	rmTBI3d/rmTBI42d	time: rmTBI 3d and 42d(3vs3)
					treatment	brain injury	rmTBI14d/rmTBI42d	time: rmTBI 14d and 42d(3vs3)
GSE99216	GPL15691	Mus musculus	lncRNA	6	treatment	microglia polarized	control/IL4	cell_type: Resting and Il4(3vs3)

Dataid	subDataid	Species	RNA	Sample	Group_1	Group_2
TCGA-LGG		Homo sapiens	mRNA	521	disease	glioma
TCGA-LGG		Homo sapiens	miRNA	521	disease	glioma
CGGA		Homo sapiens	mRNA	159	disease	glioma
CGGA		Homo sapiens	miRNA	159	disease	glioma
GSE103229_1	GSE103227	Homo sapiens	mRNA	5	normal
GSE103229_1	GSE103228	Homo sapiens	miRNA	5	normal
GSE103229_2	GSE103227	Homo sapiens	mRNA	5	disease	GBM
GSE103229_2	GSE103228	Homo sapiens	miRNA	5	disease	GBM
GSE104514_1		Mus musculus	mRNA	12	normal	wide type
GSE104514_1		Mus musculus	miRNA	12	normal	wide type
GSE104514_2		Mus musculus	mRNA	12	disease	AD
GSE104514_2		Mus musculus	miRNA	12	disease	AD
GSE132177_1		Mus musculus	mRNA	6	normal	wide type
GSE132177_1		Mus musculus	miRNA	6	normal	wide type
GSE132177_2		Mus musculus	mRNA	6	disease	AD
GSE132177_2		Mus musculus	miRNA	6	disease	AD
GSE151567_1	GSE151565	Mus musculus	mRNA	78	normal	cortex
GSE151567_1	GSE151566	Mus musculus	miRNA	78	normal	cortex
GSE151567_2	GSE151565	Mus musculus	mRNA	72	normal	hypothalamus
GSE151567_2	GSE151566	Mus musculus	miRNA	72	normal	hypothalamus
GSE151567_3	GSE151565	Mus musculus	mRNA	43	normal	striatum
GSE151567_3	GSE151566	Mus musculus	miRNA	43	normal	striatum
GSE15745_1		Homo sapiens	mRNA	141	normal	cerebellum
GSE15745_1		Homo sapiens	miRNA	141	normal	cerebellum
GSE15745_2		Homo sapiens	mRNA	141	normal	frontal cortex
GSE15745_2		Homo sapiens	miRNA	141	normal	frontal cortex
GSE15745_3		Homo sapiens	mRNA	140	normal	pons
GSE15745_3		Homo sapiens	miRNA	140	normal	pons
GSE15745_4		Homo sapiens	mRNA	142	normal	temporal cortex
GSE15745_4		Homo sapiens	miRNA	142	normal	temporal cortex
GSE21687		Homo sapiens	mRNA	62	disease	ependynoma
GSE21687		Homo sapiens	miRNA	62	disease	ependynoma
GSE25632	GSE25630	Homo sapiens	mRNA	21	disease	GBM
GSE25632	GSE25631	Homo sapiens	miRNA	21	disease	GBM
GSE62699_1		Homo sapiens	mRNA	18	normal
GSE62699_1		Homo sapiens	miRNA	18	normal
GSE62699_2		Homo sapiens	mRNA	18	disease	alcohol dependence
GSE62699_2		Homo sapiens	miRNA	18	disease	alcohol dependence
GSE65776_1	GSE65770	Mus musculus	mRNA	24	normal	wide type,cortex
GSE65776_1	GSE65769	Mus musculus	miRNA	24	normal	wide type,cortex
GSE65776_2	GSE65770	Mus musculus	mRNA	144	disease	HD
GSE65776_2	GSE65769	Mus musculus	miRNA	144	disease	HD
GSE65776_3	GSE65774	Mus musculus	mRNA	16	normal	wide type,striatum
GSE65776_3	GSE65773	Mus musculus	miRNA	16	normal	wide type,striatum
GSE65776_4	GSE65774	Mus musculus	mRNA	192	disease	HD
GSE65776_4	GSE65773	Mus musculus	miRNA	192	disease	HD
GSE73508_1	GSE73468	Mus musculus	mRNA	24	normal	wide type,cerebellum
GSE73508_1	GSE73505	Mus musculus	miRNA	24	normal	wide type,cerebellum
GSE73508_2	GSE73468	Mus musculus	mRNA	142	disease	HD
GSE73508_2	GSE73505	Mus musculus	miRNA	142	disease	HD
GSE73508_3	GSE73503	Mus musculus	mRNA	24	normal	wide type,hippocampus
GSE73508_3	GSE73507	Mus musculus	miRNA	24	normal	wide type,hippocampus
GSE73508_4	GSE73503	Mus musculus	mRNA	144	disease	HD
GSE73508_4	GSE73507	Mus musculus	miRNA	144	disease	HD
GSE86615_1	GSE86579	Rattus norvegicus	mRNA	5	normal
GSE86615_1	GSE86614	Rattus norvegicus	miRNA	5	normal
GSE86615_2	GSE86579	Rattus norvegicus	mRNA	6	disease	fluid-percussion injury
GSE86615_2	GSE86614	Rattus norvegicus	miRNA	6	disease	fluid-percussion injury
GSE90962_1		Mus musculus	mRNA	6	normal
GSE90962_1		Mus musculus	miRNA	6	normal
GSE90962_2		Mus musculus	mRNA	6	treatment	Subchronic Variable Stress
GSE90962_2		Mus musculus	miRNA	6	treatment	Subchronic Variable Stress