| AA-013 | GSE103224 | Brain | Glioblastoma,Anaplastic Astrocytoma |  |  | Illumina NextSeq 500 | 6 | 6960 | 30041684 |
| AEL_GSE142213 | GSE142213 | Marrow | Acute erythroid leukemia |  |  | 10X Genomics | 3 | 3994 | 32330454 |
| ALL_GSE132509 | GSE132509 | Marrow,Blood | Acute lymphoblastic leukemia,Normal |  |  | 10X Genomics | 4 | 37936 | 32415257 |
| ALL_GSE153697 | GSE153697 | Marrow | B-cell acute lymphoblastic leukemia |  |  | 10X Genomics | 5 | 2904 | 33558546 |
| AML_GSE135851 | GSE135851 | Kidney | Acute myeloid leukemia |  |  | 10X Genomics | 4 | 1794 | 32603599 |
| AML_GSE154109 | GSE154109 | Marrow | Acute myeloid leukemia |  |  | 10X Genomics | 4 | 10799 | 32692727 |
| AML-029 | GSE116256 | Marrow | Acute myeloid leukemia |  |  | Illumina NextSeq 500,MinION | 5 | 68923 | 30827681 |
| ATC-026 | GSE148673 | Thyroid | Anaplastic thyroid cancer |  |  | Illumina NovaSeq 6000 | 8 | 13800 | 33462507 |
| AML_GSE147989 | GSE147989 | Blood | Acute myeloid leukemia |  |  | 10X Genomics | 1 | 7389 | 32601337 |
| BCC_GSE141526 | GSE141526 | Skin | Basal cell carcinoma |  |  | 10X Genomics | 6 | 56116 | 33033234;35687691 |
| BLCA_GSE130001 | GSE130001 | Bladder | Bladder cancer |  |  | 10X Genomics | 5 | 4129 | 32111252;38812546 |
| BLCA_GSE145281_aPDL1 | GSE145281 | Blood | Metastatic Urothelial carcinoma,Metastatic Renal cell carcinoma |  |  | Illumina HiSeq 4000 | 4 | 14474 | 32405063 |
| BLCA_GSE149652 | GSE149652 | Bladder | Bladder cancer |  |  | Illumina HiSeq 2500 | 4 | 15538 | 32497499 |
| BRCA_GSE110686 | GSE110686 | Breast | Breast cancer |  |  | Illumina HiSeq 2500 | 5 | 6035 | 29942092 |
| BRCA_GSE114727_10X | GSE114727 | Breast | Breast cancer |  |  | 10X Genomics | 3 | 28678 | 29961579 |
| BRCA_GSE114727_inDrop | GSE114727 | Blood,Breast,Lymph node | Breast cancer |  |  | inDrop | 8 | 19676 | 29961579 |
| BRCA_GSE138536 | GSE138536 | Breast | Breast cancer |  |  | Illumina NextSeq 500 | 5 | 1902 | 3197424;36351000 |
| BRCA_GSE150660 | GSE150660 | Leptomeninges/CSF | Breast cancer |  |  | Illumina NovaSeq 6000 | 6 | 10605 | 32675368 |
| CESC_GSE168652 | GSE168652 | Uterine cervix | Cervical cancer |  |  | Illumina NovaSeq 6000 | 5 | 22998 | NA |
| CHOL_GSE125449_aPD1aPDL1aCTLA4 | GSE125449 | Liver | Hepatocellular carcinoma |  |  | Illumina NextSeq 500,Illumina HiSeq 4000 | 8 | 5762 | 31588021 |
| CHOL_GSE138709 | GSE138709 | Liver | Intrahepatic cholangiocarcinoma |  |  | HiSeq X Ten,Illumina NovaSeq 6000 | 6 | 33990 | NA |
| CHOL_GSE142784 | GSE142784 | Liver | Intrahepatic cholangiocarcinoma |  |  | HiSeq X Ten,Illumina NovaSeq 6000 | 7 | 10526 | NA |
| CLL_GSE111014 | GSE111014 | Blood | Chronic lymphocytic leukemia |  |  | Illumina HiSeq 4000 | 3 | 30106 | 31996669 |
| CLL_GSE125881 | GSE125881 | Blood | Chronic lymphocytic leukemia,non-Hodgkin lymphoma |  |  | Illumina HiSeq 2500 | 1 | 31052;29476 | 31924795 |
| CLL_GSE132065 | GSE132065 | Blood | Chronic lymphocytic leukemia |  |  | Illumina HiSeq 2500,Illumina HiSeq 4000 | 4 | 38637 | 32393363 |
| CLL_GSE142744 | GSE142744 | Blood | Chronic lymphocytic leukemia |  |  | Illumina HiSeq 2500 | 4 | 13550 | NA |
| CLL_GSE152469 | GSE152469 | Blood | Chronic lymphocytic leukemia |  |  | NextSeq 550 | 4 | 13071 | 33298182 |
| CLL_GSE159417 | GSE159417 | Marrow | Chronic lymphocytic leukemia,Normal |  |  | Illumina NovaSeq 6000 | 4 | 4763 | 34362918;35854350 |
| CRC_GSE108989 | GSE108989 | Blood,Colorectum | Colorectal cancer |  |  | Illumina HiSeq 4000 | 3 | 11125 | 30479382;31341169;32286268 |
| CRC_GSE136394 | GSE136394 | Lymphocyte | Colorectal cancer |  |  | NextSeq 550 | 3 | 67171 | 31484655 |
| CRC_GSE139555 | GSE139555 | Colorectum | Colorectal adenocarcinoma |  |  | Illumina HiSeq 4000 | 8 | 10112 | 32103181;35263569 |
| CRC_GSE146771_10X | GSE146771 | Blood,Colorectum | Colorectal cancer |  |  | 10X Genomics | 7 | 43817 | 32302573 |
| CRC_GSE146771_Smartseq2 | GSE146771 | Blood,Colorectum | Colorectal cancer |  |  | Smart-seq2 | 10 | 10468 | 32302573 |
| CRC_GSE166555 | GSE166555 | Colorectum | Colorectal cancer |  |  | illumina NextSeq 500 | 10 | 66050 | 34409732 |
| CRC_GSE179784 | GSE179784 | Colorectum | Colorectal cancer |  |  | DNBSEQ-G50 | 6 | 4647 | 36443332 |
| CRC-016 | E-MTAB-8410 | Colorectum | Colorectal cancer |  |  | Illumina HiSeq 4000,Illumina NovaSeq 6000,NextSeq 500 | 8 | 23734 | NA |
| DCIS-028 | GSE148673 | Breast | Ductal carcinoma in situ |  |  | Illumina NovaSeq 6000 | 5 | 1114 | 33462507 |
| DLBC_GSE175510 | GSE175510 | Brain | Diffuse large B-cell lymphoma |  |  | HiSeq X Ten | 4 | 1412 | 34471864 |
| E-MTAB-6149 | E-MTAB-6149 | Lung | Non-small cell lung cancer |  |  | Illumina HiSeq4000 | 1 | 3524 | 29988129 |
| ESCA_GSE173950 | GSE173950 | Esophageal | Esophageal adenocarcinoma |  |  | Illumina NextSeq 500 | 8 | 9544 | NA |
| GBM-009 | GSE141946 | Brain,Organoid | Glioblastoma |  |  | NextSeq 550 | 8 | 23033 | 31883794 |
| GBM-010 | GSE139448 | Brain | Glioblastoma |  |  | Illumina HiSeq 2000 | 5 | 12607 | 32004492 |
| GBM-011 | GSE84465 | Brain | Glioblastoma |  |  | Illumina NextSeq 500 | 7 | 2674 | 29091775 |
| GBM-012 | GSE103224 | Brain | High grade glioma |  |  | Illumina NextSeq 500 | 7 | 29216 | 30041684 |
| GBM-019 | GSE148842 | Brain | Glioblastoma |  |  | Illumina NextSeq 500,Illumina NovaSeq 6000 | 5 | 186786 | 33975634 |
| GCTB_GSE168664 | GSE168664 | Bone | Giant bone cell tumor |  |  | Illumina NovaSeq 6000 | 4 | 12380 | NA |
| GIST_GSE162115 | GSE162115 | Gastrointestinal | Gastrointestinal stromal tumor |  |  | HiSeq X Ten | 6 | 35308 | 33393143 |
| Glioma_GSE131928_10X | GSE131928 | Brain | Glioblastoma |  |  | Illumina NextSeq 500 | 3 | 13558 | 31327527 |
| Glioma_GSE131928_Smartseq2 | GSE131928 | Brain | Glioblastoma |  |  | Illumina NextSeq 500 | 3 | 7930 | 31327527 |
| Glioma_GSE135437 | GSE135437 | Brain | Glioblastoma multiforme |  |  | Illumina HiSeq 3000 | 4 | 6411 | 31740814 |
| Glioma_GSE138794 | GSE138794 | Brain | Glioma |  |  | Illumina NovaSeq 6000 | 4 | 17994 | 31554641 |
| Glioma_GSE141383 | GSE141383 | Brain | Glioma |  |  | Illumina NextSeq 500 | 5 | 10502 | 34011400 |
| Glioma_GSE141460 | GSE141460 | Brain | Ependymoma |  |  | Illumina NextSeq 500 | 4 | 6385 | 32663469 |
| Glioma_GSE141982 | GSE141982 | Brain | Glioblastoma |  |  | Illumina NovaSeq 6000 | 4 | 5261 | 32105316 |
| Glioma_GSE163108_10X | GSE163108 | Brain | Glioblastoma |  |  | HiSeq X Ten | 3 | 25013 | 33592174 |
| Glioma_GSE163108_Smartseq2 | GSE163108 | Brain | Glioblastoma |  |  | HiSeq X Ten | 2 | 8244 | 33592174 |
| GSE102130 | GSE102130 | Brain | Glioma |  |  | Illumina NextSeq 500 | 1 | 3122 | 29674595 |
| GSE103322 | GSE103322 | Brain | Head and neck cancer |  |  | Illumina NextSeq 500 | 1 | 2215 | 29198524 |
| GSE110499 | GSE110499 | Marrow,Extramedullary | Multiple myeloma |  |  | Illumina HiSeq 2500 | 1 | 1304 | 29898899;31558476 |
| GSE113660 | GSE113660 | NA | Human alveolar rhabdomyosarcoma |  |  | Illumina HiSeq 4000 | 1 | 6875 | 29855333;31566233 |
| GSE136929 | GSE136929 | Eye | Retinoblastoma |  |  | Illumina HiSeq 2000,HiSeq X Ten,Illumina NovaSeq 6000 | 1 | 9345 | 33318192 |
| GSE139829 | GSE139829 | NA | Uveal melanoma |  |  | Illumina NextSeq 500 | 1 | 36155 | 31980621 |
| GSE154763_ESCA_normalized | GSE154763 | Esophagus | Esophageal carcinoma |  |  | Hiseq X Ten | 4 | 7673 | 33545035 |
| GSE154763_KIDNEY_normalized | GSE154763 | Kidney | Renal cancer |  |  | Hiseq X Ten | 3 | 28930 | 33545035 |
| GSE154763_MYE_normalized | GSE154763 | Blood | Myeloma |  |  | Hiseq X Ten | 3 | 7619 | 33545035 |
| GSE154763_OV-FTC_normalized | GSE154763 | Ovary | Ovarian or fallopian tube carcinoma |  |  | Hiseq X Ten | 2 | 3888 | 33545035 |
| GSE154763_PAAD_normalized | GSE154763 | Pancreatic | Pancreatic adenocarcinoma |  |  | Hiseq X Ten | 3 | 2853 | 33545035 |
| GSE154763_THCA_normalized | GSE154763 | Thyroid | Thyroid carcinoma |  |  | Hiseq X Ten | 4 | 5312 | 33545035 |
| GSE154763_UCEC_normalized | GSE154763 | Uterine | Uterine Corpus Endometrial Carcinoma |  |  | Hiseq X Ten | 4 | 8808 | 33545035 |
| GSE166181_Normalized_UMI_CountMatrix | GSE166181 | Blood | Melanoma |  |  | NextSeq 550 | 1 | 1284 | 33723257 |
| GSE65525 | GSE65525 | NA | Lymphoblastoma |  |  | Illumina HiSeq 2500 | 1 | 1192 | 26000487 |
| GSE70630 | GSE70630 | Brain | Oligodendroglioma |  |  | Illumina NextSeq 500 | 1 | 4043 | 27806376 |
| GSE72056 | GSE72056 | Acral,Colorectum,Lymph node,Skin,Spleen | Melanoma |  |  | Illumina NextSeq 500 | 1 | 1257 | 27124452 |
| GSE76312 | GSE76312 | NA | Chronic myeloid leukemia |  |  | Illumina HiSeq 2000,Illumina HiSeq 4000 | 1 | 1968 | 28504724 |
| GSE89567 | GSE89567 | Brain | Astrocytoma |  |  | Illumina NextSeq 500 | 1 | 5097 | 28360267 |
| HNSC_GSE180268 | GSE180268 | Brain | Head and neck cancer |  |  | Illumina HiSeq 3000 | 1 | 53660 | 34471285 |
| HB_GSE180665 | GSE180665 | Liver | Hepatoblastoma |  |  | Illumina NovaSeq 6000 | 4 | 46486 | 34497364 |
| HCC-025 | GSE107747 | Blood | Hepatocellular carcinoma |  |  | Illumina HiSeq 2500 | 6 | 9443 | 30068984 |
| KICH_GSE159115 | GSE159115 | Kidney | Chromophobe renal cell carcinoma |  |  | Illumina HiSeq 2500 | 4 | 2580 | 34099557 |
| KIPAN_GSE159913 | GSE159913 | Kidney | Renal carcinoma |  |  | Illumina HiSeq 2000 | 1 | 15477 | 33264598 |
| KIRC_GSE111360 | GSE111360 | Kidney | Clear cell renal cell carcinoma |  |  | Illumina HiSeq 4000,Illumina NovaSeq 6000 | 6 | 23130 | 30550791 |
| KIRC_GSE121636 | GSE121636 | Kidney,Blood | Clear cell renal cell carcinoma |  |  | Illumina HiSeq 4000 | 7 | 25681 | 33504936 |
| KIRC_GSE159115 | GSE159115 | Kidney | Clear cell renal cell carcinoma |  |  | Illumina HiSeq 2500 | 5 | 27669 | 34099557 |
| KIRC_GSE171306 | GSE171306 | Kidney | Clear cell renal cell carcinoma |  |  | Illumina NovaSeq 6000 | 7 | 11427 | 34168986 |
| LIHC_GSE140228_10X | GSE140228 | Ascites,Blood,Lymph node,Liver | Hepatocellular carcinoma |  |  | Illumina HiSeq 4000 | 8 | 61690 | 31675496 |
| LIHC_GSE140228_Smartseq2 | GSE140228 | Ascites,Blood,Liver,Lymph node | Hepatocellular carcinoma |  |  | Illumina HiSeq 4000 | 6 | 7074 | 31675496 |
| LIHC_GSE166635 | GSE166635 | Liver | Liver cancer |  |  | Illumina NovaSeq 6000 | 7 | 22631 | 33619115 |
| LIHC_GSE179795 | GSE179795 | Liver | Liver Hepatocellular Carcinoma |  |  | Illumina NextSeq 500 | 3 | 2352 | 34340996;35833139 |
| LIHC_GSE98638 | GSE98638 | Blood,Liver | Hepatocellular carcinoma |  |  | Illumina HiSeq 2500 | 3 | 5059 | 28622514 |
| LSCC_GSE150321 | GSE150321 | Throat | Laryngeal Squamous Cell Carcinoma |  |  | Illumina HiSeq 2500 | 9 | 12687 | 32638385 |
| LUAD-003 | GSE123904 | Lung | Lung adenocarcinoma |  |  | Illumina HiSeq 2500,Illumina HiSeq 4000 | 8 | 29226 | 32042191 |
| LUAD-004 | E-MTAB-6149 | Lung | Lung adenocarcinoma |  |  | Illumina HiSeq4000 | 9 | 27822 | 29988129 |
| LUSC-005 | E-MTAB-6149 | Lung | Lung squamous cell carcinoma |  |  | Illumina HiSeq4000 | 7 | 4112 | 29988129 |
| MB_GSE119926 | GSE119926 | Brain | Medulloblastoma |  |  | Illumina NextSeq 500 | 2 | 7745 | 31341285 |
| MB_GSE155446 | GSE155446 | Brain | Medulloblastoma |  |  | Illumina NovaSeq 6000 | 4 | 37445 | 34077540 |
| MCC-001 | GSE117988 | NA | Mechanisms of Merkel cell carcinoma |  |  | Illumina HiSeq 2500 | 6 | 7837 | 30250229 |
| MCC-002 | GSE118056 | NA | Mechanisms of Merkel cell carcinoma |  |  | Illumina NovaSeq 6000 | 6 | 9901 | 30250229 |
| MF_GSE165623 | GSE165623 | Blood,Skin,Lymph node | Mycosis fungoides |  |  | Illumina NovaSeq 6000 | 9 | 9753 | 33968070 |
| MF_GSE173820 | GSE173820 | Skin | Mycosis fungoides |  |  | Illumina NovaSeq 6000 | 6 | 5270 | 34018188 |
| MIUBC-023 | GSE145137 | Bladder | Bladder cancer |  |  | Illumina Hiseq 2500 | 7 | 1809 | 32460812 |
| MM_GSE117156 | GSE117156 | Marrow | Plasma cell neoplasm,Normal |  |  | Illumina NextSeq 500 | 3 | 24918 | 30523328 |
| MM_GSE141299 | GSE141299 | Marrow | Multiple myeloma,Normal |  |  | Illumina Genome Analyzer | 1 | 16840 | NA |
| MM_GSE143317 | GSE143317 | Bone marrow aspirate | Multiple Myeloma |  |  | Illumina NovaSeq 6000 | 6 | 4882 | 33619368 |
| MM_GSE151310 | GSE151310 | Blood | Refractory primary plasma cell leukemia |  |  | HiSeq X Ten | 2 | 55922 | 33278564 |
| MM_GSE175385 | GSE175385 | Marrow,Blood,Secondary lymphoid organ | Multiple Myeloma |  |  | Illumina NextSeq 500 | 3 | 79277 | 34133718 |
| MPAL-022 | GSE139369 | Blood,Marrow | Mixed-phenotype acute leukemia |  |  | NextSeq 550,Illumina NovaSeq 6000 | 8 | 17613 | 31792411;37597510 |
| MPNST_GSE165826 | GSE165826 | Nervous System | Malignant peripheral nerve sheath tumor |  |  | Illumina NextSeq 500 | 3 | 4754 | 34010628 |
| NBL-017 | GSE140312 | Liver,Small intestinal | Neuroendocrine tumor |  |  | Illumina HiSeq 4000 | 5 | 3363 | 32054662 |
| NB_GSE154037 | GSE154037 | Blood | Neuroblastoma |  |  | Illumina NovaSeq 6000 | 1 | 9008 | 33046868 |
| Neurofibroma_GSE163028 | GSE163028 | Skin | Cutaneous neurofibroma |  |  | Illumina NextSeq 500 | 3 | 13152 | 33413690 |
| NHL_GSE128531 | GSE128531 | Skin | Cutaneous T-Cell Lymphoma,Normal |  |  | Illumina NextSeq 500 | 6 | 30497 | 31010835 |
| NHL_GSE147944 | GSE147944 | Skin | Advanced-stage cutaneous T-cell lymphoma |  |  | Illumina NextSeq 500 | 8 | 11245 | 32438399 |
| NPC_GSE150430 | GSE150430 | Nasopharyngeal | Nasopharyngeal carcinoma |  |  | HiSeq X Ten | 7 | 45959 | 32686767 |
| NSCLC_GSE117570 | GSE117570 | Lung | Non-small cell lung cancer |  |  | Illumina NextSeq 500 | 6 | 11453 | 34295900;31033233 |
| NSCLC_GSE127465 | GSE127465 | Blood,Lung | Non-small cell lung tumor |  |  | Illumina NextSeq 500 | 10 | 31179 | 30979687 |
| NSCLC_GSE127471 | GSE127471 | Blood | Non-small Cell Lung Cancer |  |  | Illumina NextSeq 500 | 4 | 1108 | 31061481 |
| NSCLC_GSE146100 | GSE146100 | Lung | Lung adenocarcinoma |  |  | Illumina NovaSeq 6000 | 7 | 10996 | 33820821 |
| NSCLC_GSE149655 | GSE149655 | Lung | Lung adenocarcinoma |  |  | Illumina NovaSeq 6000 | 5 | 9591 | 32891189 |
| NSCLC_GSE153935 | GSE153935 | Lung | Non-small Cell Lung Cancer |  |  | Illumina HiSeq 2500,Illumina NovaSeq 6000 | 7 | 5859 | 36720863 |
| NSCLC_GSE162498 | GSE162498 | Lung,Blood | Non-small Cell Lung Cancer |  |  | Illumina HiSeq 2500,Illumina NovaSeq 6000 | 4 | 68255 | 33514641 |
| NSCLC_GSE179373 | GSE179373 | Brain | Lung adenocarcinoma,Lung squamous cell carcinoma |  |  | Illumina NovaSeq 6000 | 3 | 12930 | 35584630;35707680 |
| NSCLC_GSE99254 | GSE99254 | Lung | Non-small Cell Lung Cancer |  |  | Illumina HiSeq 2500,Illumina HiSeq 4000 | 3 | 12344 | 29942094 |
| NSCLC-006 | E-MTAB-6149 | Lung | Non-small Cell Lung Cancer |  |  | Illumina HiSeq4000 | 10 | 17004 | 29988129 |
| NSCLC-007 | GSE143423 | Brain | Lung adenocarcinoma |  |  | HiSeq X Ten | 7 | 28025 | NA |
| OS_GSE162454 | GSE162454 | Bone | Osteosarcoma |  |  | Illumina NovaSeq 6000 | 8 | 46544 | 34367994;36507075;38755647 |
| OV_GSE115007 | GSE115007 | Ascites | Ovarian cancer |  |  | Illumina HiSeq 2500 | 3 | 6000 | 29967419 |
| OV_GSE118828 | GSE118828 | Ovary | Ovarian cancer |  |  | Illumina NextSeq 500 | 7 | 1909 | 30383866 |
| OV_GSE130000 | GSE130000 | Ovary | Ovarian cancer |  |  | Illumina NextSeq 500 | 6 | 11215 | 34992217 |
| OV_GSE147082 | GSE147082 | Ovary | Ovarian cancer |  |  | Illumina NextSeq 500 | 7 | 9796 | 34038734 |
| OV_GSE154600 | GSE154600 | Ovary | High-grade serous ovarian carcinoma |  |  | Illumina HiSeq 2500 | 8 | 42583 | 32747365 |
| OV-020 | E-MTAB-8559 | Ascites,Ovary | Ovarian Carcinoma |  |  | Illumina NextSeq 500 | 2 | 17719 | 32054838 |
| PAAD_GSE111672 | GSE111672 | Pancreatic | Pancreatic adenocarcinoma |  |  | Illumina NextSeq 500 | 7 | 6122 | 31932730 |
| PAAD_GSE141017 | GSE141017 | Pancreas | Pancreas tumor |  |  | Illumina HiSeq 2500 | 4 | 4917 | 32908137; 33649045 |
| PAAD_GSE154778 | GSE154778 | Pancreas | Pancreatic ductal adenocarcinoma |  |  | Illumina HiSeq 4000 | 5 | 14953 | 32988401 |
| PAAD_GSE158356 | GSE158356 | Liver | Pancreatic Adenocarcinoma |  |  | Illumina NovaSeq 6000 | 6 | 4113 | 33782087 |
| PAAD_GSE162708 | GSE162708 | Pancreatic head,Liver,Pancreatic body,Peripheral venous blood | Metastatic pancreatic neuroendocrine tumor |  |  | Illumina NovaSeq 6000 | 7 | 22133 | 34671197 |
| PAAD_GSE165399 | GSE165399 | Pancreas | Intraductal papillary mucinous neoplasm,Pancreatic adenosquamous carcinoma,Normal |  |  | HiSeq X Ten | 7 | 9569 | 34326696 |
| PAAD_GSE176031 | GSE176031 | Prostate | Prostate cancer |  |  | Illumina HiSeq 2000 | 6 | 18807 | 35013146 |
| PDAC-027 | PRJCA001063 | Pancreatic | Pancreatic ductal adenocarcinoma |  |  | Illumina HiSeq X Ten | 11 | 81795 | 31273297 |
| PPB_GSE163678 | GSE163678 | Pleura | Pleuropulmonary blastoma |  |  | Illumina NovaSeq 6000 | 2 | 12239 | NA |
| PRAD_GSE137829 | GSE137829 | Prostate | Castration-resistant prostate cancer |  |  | Illumina NovaSeq 6000 | 7 | 25436 | 33328604;37092583 |
| PRAD_GSE141445 | GSE141445 | Prostate | Prostate cancer |  |  | Illumina NovaSeq 6000 | 7 | 33440 | 33420488 |
| PRAD_GSE143791 | GSE143791 | Marrow | Prostate cancer |  |  | Illumina Genome Analyzer,Illumina HiSeq 4000 | 8 | 36850 | 34719426 |
| PRAD_GSE150692 | GSE150692 | Prostate | Prostate Adenocarcinoma |  |  | Illumina NovaSeq 6000 | 2 | 6710 | 32915138 |
| SCC_GSE144236 | GSE144236 | Skin | Squamous Cell Carcinoma |  |  | Illumina HiSeq 4000 | 8 | 26232 | 32579974 |
| SCLC_GSE150766 | GSE150766 | Liver | Small Cell Lung Cancer |  |  | Illumina NovaSeq 6000 | 6 | 1924 | 34016693 |
| SKCM_GSE115978_aPD1 | GSE115978 | Skin,Adrenal gland,Lymph node,Soft tissue,Spleen,Transverse colon,Terminal Ileum,Small bowel,Transanal rectal mass | Melanoma tumor |  |  | Illumina NextSeq 500 | 8 | 7186 | 30388455 |
| SKCM_GSE120575_aPD1aCTLA4 | GSE120575 | Skin | Melanoma |  |  | Illumina NextSeq 500 | 6 | 16291 | 30388456 |
| SKCM_GSE123139 | GSE123139 | Blood,Lymph node,Muscular,Skin | Melanoma |  |  | Illumina NextSeq 500 | 6 | 35494 | 30595452 |
| SKCM_GSE134388_aPD1 | GSE134388 | Skin | Skin Cutaneous Melanoma |  |  | Illumina HiSeq 4000 | 5 | 3632 | 32747553 |
| SKCM_GSE139249 | GSE139249 | Blood,Skin | Melanoma |  |  | Illumina HiSeq 4000 | 6 | 39884 | 31801909 |
| SKCM_GSE148190 | GSE148190 | Lymph node,Blood,Skin | Melanoma |  |  | Illumina NovaSeq 6000 | 5 | 27834 | 32539073 |
| SKCM_GSE159251 | GSE159251 | Skin,Blood,Lymph node | Melanoma |  |  | Illumina HiSeq 4000 | 2 | 95421 | 33651880 |
| SS_GSE131309_10X | GSE131309 | Chest wall,Thyroid,Knee | Synovial sarcoma |  |  | Illumina HiSeq 4000 | 4 | 9205 | 33495604 |
| SS_GSE131309_Smartseq2 | GSE131309 | Para-aortic,Lung,Lung (L sup lobe),Lung (L inf lobe),Chest wall,Thyroid,Knee,Thigh | Synovial Sarcoma |  |  | Illumina NextSeq 500 | 7 | 7109 | 33495604 |
| STAD_GSE167297 | GSE167297 | Stomach | Diffuse-Type Gastric Cancer |  |  | Illumina HiSeq 4000 | 10 | 22464 | 34385296 |
| STAD-014 | GSE134520 | Stomach | Stomach Adenocarcinoma |  |  | HiSeq X Ten | 4 | 1462 | 31067475;33521016 |
| THCA_GSE163203 | GSE163203 | Thyroid | Thyroid Carcinoma |  |  | HiSeq X Ten | 5 | 1561 | 34805166 |
| TNBC-008 | GSE143423 | Brain | Triple Negative Breast Cancer |  |  | HiSeq X Ten | 7 | 1737 | NA |
| TNBC-021 | GSE148673 | Breast | Triple Negative Breast Cancer |  |  | Illumina NovaSeq 6000 | 6 | 3935 | 33462507 |
| UCEC-024 | NA | Endometrial | Endometrial Carcinoma |  |  | 10X Genomics | 4 | 4810 | 32686114 |
| UVM_GSE138433 | GSE138433 | Eye | Uveal Melanoma |  |  | Illumina NextSeq 500 | 2 | 12682 | 32539073 |
| UVM_GSE160883 | GSE160883 | Eye | Uveal Melanoma |  |  | Illumina HiSeq 2500 | 2 | 12977 | 34518527 |
| UVM_GSE169609 | GSE169609 | Eye | Uveal Melanoma |  |  | Illumina NovaSeq 6000 | 2 | 17524 | 33811047 |
| E_MTAB_11948 | E_MTAB_11948 | Uterine cervix | Cervical squamous cell carcinoma |  |  | Illumina | 7 | 28058 | 36357663 |
| E_MTAB_12305 | E_MTAB_12305 | Uterine cervix | Cervical squamous cell carcinoma,Precancerous lesions |  |  | Illumina | 9 | 38517 | 35812401 |
| GSE112271 | GSE112271 | Liver | Hepatocellular carcinoma |  |  | Illumina | 5 | 8603 | 31941899 |
| GSE135337 | GSE135337 | Bladder | Bladder cancer |  |  | Illumina | 6 | 24078 | 34480339 |
| GSE149614 | GSE149614 | Liver,Lymph node,Portal vein tumor thrombus | Hepatocellular carcinoma |  |  | Illumina | 10 | 25220 | 35933472;35933472;38414027 |
| GSE150290 | GSE150290 | Stomach | EGC,CAG with IM,AGC,CSG |  |  | Illumina | 8 | 18800 | 35087207 |
| GSE151530_iCCA | GSE151530 | Liver | Intrahepatic cholangiocarcinoma |  |  | Illumina NextSeq 500,Illumina HiSeq 4000,Illumina NovaSeq 6000 | 6 | 1070 | 34216724;31588021 |
| GSE151530_LIHC | GSE151530 | Liver | Hepatocellular carcinoma |  |  | Illumina NextSeq 500,Illumina HiSeq 4000,Illumina NovaSeq 6000 | 6 | 14306 | 34216724;31588021 |
| GSE152938 | GSE152938 | Kidney | Chromophobe renal cell carcinoma,Clear cell renal cell carcinoma,Papillary renal cell carcinoma |  |  | HiSeq X Ten | 7 | 24874 | 34722263 |
| GSE154170 | GSE154170 | Liver | Hilar cholangiocarcinoma |  |  | Illumina NovaSeq 6000 | 8 | 1264 | 33930309 |
| GSE156632 | GSE156632 | Kidney | Clear cell renal cell carcinoma |  |  | Illumina NovaSeq 6000 | 7 | 9061 | 35605062 |
| GSE157703 | GSE157703 | Prostate | Prostate cancer |  |  | HiSeq X Ten | 9 | 2892 | 33032611 |
| GSE161277 | GSE161277 | Blood,Colorectum | Colorectal cancer |  |  | HiSeq X Ten | 7 | 14600 | 35221332 |
| GSE163558 | GSE163558 | Liver,Lymph node,Ovary,Peritoneum,Stomach | Gastric cancer |  |  | Illumina NovaSeq 6000 | 8 | 16236 | 35184420 |
| GSE164690 | GSE164690 | Blood,Larynx,Oral cavity,Oropharynx | Head and neck squamous cell carcinoma |  |  | Illumina NextSeq 500 | 10 | 25759 | 34921143;35392082 |
| GSE165897 | GSE165897 | Bowel,Mesentery,Omentum,Peritoneum | High-grade serous ovarian cancer |  |  | Illumina HiSeq 2500,Illumina HiSeq 4000,Illumina NovaSeq 6000 | 6 | 16546 | 35196078;38168227 |
| GSE171145 | GSE171145 | Lung | Lung adenocarcinoma |  |  | Illumina NovaSeq 6000 | 7 | 10812 | 35140113 |
| GSE171894 | GSE171894 | Uterine cervix | Cervical cancer |  |  | Illumina HiSeq 2500 | 4 | 1966 | 38482016 |
| GSE173278 | GSE173278 | Brain | Glioblastoma |  |  | Illumina HiSeq 2500 | 5 | 64358 | 35303420 |
| GSE176249 | GSE176249 | Bladder | Bladder cancer |  |  | Illumina HiSeq 4000 | 7 | 2468 | 36323682 |
| GSE178481 | GSE178481 | Kidney | Clear cell renal cell carcinoma,Papillary renal cell carcinoma |  |  | Illumina NextSeq 500 | 15 | 11342 | 36180422;38281962 |
| GSE180286 | GSE180286 | Breast,Lymph node | Breast cancer |  |  | HiSeq X Ten | 6 | 6601 | 34611125;36148946 |
| GSE181294 | GSE181294 | Prostate | Prostate adenocarcinoma,Normal |  |  | Illumina NextSeq 500 | 9 | 7549 | 36750562 |
| GSE183904 | GSE183904 | Stomach,Peritoneum | Gastric cancer,Normal,Peritoneal Tumor |  |  | Illumina NovaSeq 6000 | 11 | 31534 | 34642171 |
| GSE183916 | GSE183916 | Peritoneum | Colorectal cancer |  |  | Illumina HiSeq 4000 | 5 | 8599 | 35927254 |
| GSE184198 | GSE184198 | Stomach | Gastric cancer |  |  | Illumina NovaSeq 6000 | 7 | 4513 | 36372898 |
| GSE184880 | GSE184880 | Ovary | High-grade serous ovarian cancer,Normal |  |  | Illumina NovaSeq 6000 | 9 | 35361 | 35675036 |
| GSE185344 | GSE185344 | Prostate | Prostate cancer |  |  | Illumina NovaSeq 6000 | 10 | 22667 | 36229464 |
| GSE188711 | GSE188711 | Colorectum | Colorectal cancer |  |  | Illumina NovaSeq 6000 | 12 | 6293 | 34793335 |
| GSE189903_iCCA | GSE189903 | Liver | Intrahepatic cholangiocarcinoma |  |  | Illumina NovaSeq 6000 | 6 | 1478 | 36476645 |
| GSE189903_LIHC | GSE189903 | Liver | Hepatocellular carcinoma |  |  | Illumina NovaSeq 6000 | 6 | 5952 | 36476645 |
| GSE190888 | GSE190888 | Bladder | Bladder cancer,Cystitis glandularis |  |  | HiSeq X Ten | 7 | 11852 | 35265520 |
| GSE193337 | GSE193337 | Prostate | Prostate cancer |  |  | Ion Torrent Proton,Illumina HiSeq 4000 | 8 | 12147 | 35717322 |
| GSE195832 | GSE195832 | Oral cavity | Head and neck squamous cell carcinoma |  |  | Illumina NovaSeq 6000 | 7 | 11624 | 35262677 |
| GSE196756 | GSE196756 | Esophagus | Esophageal cancer |  |  | Illumina NovaSeq 6000 | 10 | 11607 | 36260317 |
| GSE200997 | GSE200997 | Colorectum | Colorectal cancer |  |  | NextSeq 550 | 7 | 4178 | 35538548 |
| GSE202371_GBM | GSE202371 | Brain | Glioma |  |  | Illumina NovaSeq 6000 | 7 | 7890 | 36336787 |
| GSE202371_LC | GSE202371 | Brain | Lung-to-brain metastases |  |  | Illumina NovaSeq 6000 | 9 | 18026 | 36336787 |
| GSE208653 | GSE208653 | Uterine cervix | Cervical cancer,Normal |  |  | Illumina NovaSeq 6000 | 10 | 31911 | 36967539;37794698 |
| GSE211388 | GSE211388 | Bladder | Bladder cancer |  |  | Illumina NextSeq 500 | 10 | 3095 | 36129800 |
| GSE211956 | GSE211956 | Ovary | High-grade serous ovarian carcinoma |  |  | Illumina NovaSeq 6000 | 7 | 13589 | 38570491 |
| GSE212966 | GSE212966 | Pancreatic | Pancreatic ductal adenocarcinoma |  |  | Illumina NovaSeq 6000 | 10 | 19666 | 36944944;36944944 |
| GSE213243 | GSE213243 | Ascites,Blood,Ovary | High-grade serous ovarian cancer |  |  | Illumina NovaSeq 6000 | 6 | 16768 | 36248860 |
| GSE221575 | GSE221575 | Colorectum,Liver | Colorectal cancer |  |  | HiSeq X Ten,Illumina NovaSeq 6000 | 7 | 4681 | 38253219 |