Bulk datasets of cancer immunotherapy in CiTSA

Dataset ID Dataset Name Cancer Name Cancer Type Immunotherapy Type Sample Type Sample Number Source Accession
Bulk0001Keith Kerstann(2007)Metastatic MelanomaSKCMAdoptive Cell Therapyresponse/non-response12/16tumor infiltrating lymphocytesGSE6592
Bulk0002Irvin DK.PLoS One(2010)GliomasGBMLGGCancer Vaccinetreatment/non-treatment6/10BrainGSE11100
Bulk0003Biernacki MA.Cancer Res(2010)chronic myelogenous leukemiaCMLAdoptive Cell Therapytreatment/non-treatment2/2SerumGSE11565
Bulk0004Biernacki MA.Cancer Res(2010)chronic myelogenous leukemiaCMLAdoptive Cell Therapytreatment/non-treatment2/1SerumGSE11565
Bulk0005Kim YJ.Clin Cancer Res(2010)Bladder cancersBLCACancer Vaccineresponse/non-response26/22BladderGSE19423
Bulk0006Rafael Carretero(2011)Metastatic MelanomaSKCMCancer Vaccineresponse/non-response;treatment/non-treatment6/4;5/5SkinGSE26383
Bulk0007Wolf B.PLoS One(2012)renal cell carcinomaKIRCCancer Vaccinetreatment/non-treatment13/17Periphereal blood lymphocytesGSE34465
Bulk0008Ulloa-Montoya F. J Clin Oncol(2013)MelanomaSKCMCancer Vaccineresponse/non-response22/34SkinGSE35640
Bulk0009Kwek SS.J Immunol(2012)prostate cancerPRADImmune Checkpoint Therapyresponse/non-response;treatment/non-treatment10/12;11/11SerumGSE39688
Bulk0010Florcken A.Int J Cancer(2015)advanced renal cell cancerKIRCCancer Vaccinetreatment/non-treatment9/9PMBCsGSE51490
Bulk0011Newman AM.Nat Methods(2015)follicular lymphomaDLBCImmunostimulant OR Targeting Therapytreatment/non-treatment1/3PMBCsGSE65135
Bulk0012Ascierto ML.Cancer Immunol Res(2016)Renal Cell CarcinomaKIRCImmune Checkpoint Therapyresponse/non-response4/7RCC Primary tumorGSE67501
Bulk0013Hugo W.Cell (2016)Metastatic MelanomaSKCMImmune Checkpoint Therapyresponse/non-response15/13SkinGSE78220
Bulk0014Ascierto ML.Clin Cancer Res(2017)melanoma skin metastasisSKCMImmune Checkpoint Therapyresponse/non-response6/4SkinGSE79691
Bulk0015Francesco Maria Marincola(2017)metastatic melanomaSKCMCancer Vaccinetreatment/non-treatment14/7SkinGSE79741
Bulk0016Mauldin IS.Cancer Immunol Immunother(2016)metastatic melanomaSKCMCancer Vaccinetreatment/non-treatment8/3SkinGSE80028
Bulk0017Riaz N.Cell(2017)melanoma;non-small cell lung cancerSKCM;NSCLCImmune Checkpoint Therapyresponse/non-response;treatment/non-treatment23/82;58/51SkinGSE91061
Bulk0018Lauss M.Nat Commun (2017)melanomaSKCMAdoptive Cell Therapyresponse/non-response10/15SkinGSE100797
Bulk0019Garcia-Salum T.Oncotarget(2018)MelanomaSKCMAdoptive Cell Therapytreatment/non-treatment39/8BloodGSE106128
Bulk0020Auslander N.Nat Med(2018)metastatic melanomaSKCMImmune Checkpoint Therapyresponse/non-response3/34SkinGSE115821
Bulk0021Vujanovic L.Front Immunol(2019)MelanomaSKCMCancer Vaccineresponse/non-response;treatment/non-treatment5/36;21/20SkinGSE124574
Bulk0022Cho JW.Exp Mol Med(2020)non-small cell lung cancerNSCLCImmune Checkpoint Therapyresponse/non-response5/11NSCLCGSE126044
Bulk0023Jung H.Nat Commun(2019)non-small cell lung carcinomaNSCLCImmune Checkpoint Therapyresponse/non-response6/21LungGSE135222
Bulk0024Hwang S.Sci Rep(2020)non-small cell lung carcinomaNSCLCImmune Checkpoint Therapyresponse/non-response9/12LungGSE136961
Bulk0025Quintela-Fandino M.Breast Cancer Res (2020)HER2-negative advanced breast cancerBRCAImmune Checkpoint Therapyresponse/non-response3/3Breast tumorGSE139050
Bulk0026Middleton MR.Clin Cancer Res(2020)Metastatic MelanomaSKCMImmunostimulant OR Targeting Therapyresponse/non-response;treatment/non-treatment5/20;16/9SkinGSE139566
Bulk0027Hatae R.JCI Insight (2020)Non-small cell lung cancerNSCLCImmune Checkpoint Therapytreatment/non-treatment33/41Peripheral bloodGSE141479
Bulk0028Lim J(2020)GBMGBMAdoptive Cell Therapyresponse/non-response5/7Glioblastoma tumorGSE142693
Bulk0029Baruch EN.Science (2021)melanomaSKCMImmune Checkpoint Therapyresponse/non-response;treatment/non-treatment9/9Sigmoid colon;Remote tumor metastasisGSE162436
Bulk0030Lee JS.Cell (2021)Lung cancerNSCLCImmunotherapyresponse/non-response7/15LungGSE166449
Bulk0031van den Ende T.Clin Cancer Res(2021)esophageal adenocarcinomaESADImmune Checkpoint Therapyresponse/non-response23/48Esophageal adenocarcinomaGSE165252
Bulk0032Monica Martinez-Fernandez(2018)bladder cancerBLCAImmune Checkpoint Therapyresponse/non-response6/5BladderGSE111636
Bulk0033David T Ting(2021)microsatellite stable colorectal;pancreatic cancerCOCA;PAADImmune Checkpoint Therapytreatment/non-treatment11/43Metastatic tumorGSE179351
Bulk0034Loughran TP Jr.Leukemia (2015)Large Granular Lymphocyte leukemiaLGLLImmunosuppressive Therapyresponse/non-response19/18PBMCGSE42664
Bulk0035Rajkumar Balakrishnan(2020)chronic lymphocytic leukemiaCLLImmune Checkpoint Therapyresponse/non-response30/32CD3+ T cellsGSE148476

Single cell datasets of cancer immunotherapy in CiTSA

Dataset ID Dataset Name Cancer Name Cancer Type Immunotherapy Type Sample Type Sample Number Cell Number Source Accession
SC0001Jerby-Arnon L.Cell(2018)melanomaSKCMImmune Checkpoint Therapytreatment/non-treatment16/163556/3630SkinGSE115978
SC0002Paulson KG.Nat Commun(2018)Merkel cell carcinomaMERKELImmune Checkpoint Therapyresponse/non-response;treatment/non-treatment3/1;3/18358/4516;10792/2082PBMCGSE117988
SC0003Paulson KG.Nat Commun(2018)Merkel cell carcinomaMERKELImmune Checkpoint Therapyresponse/non-response;treatment/non-treatment1/1;1/12243/5188;5188/2243Merkel Cell Carcinoma TumorGSE117988
SC0004Sade-Feldman M.Cell(2018)MelanomaSKCMImmune Checkpoint Therapyresponse/non-response;treatment/non-treatment17/31;29/195564/10728;10363/5929SkinGSE120575
SC0005Yost KE.Nat Med(2019)basal cell carcinomaBCCImmune Checkpoint Therapytreatment/non-treatment11/1131702/21329tumor-infiltrating T cells;CD45+ CD3- tumor-infiltrating lymphocytes;CD45- CD3- tumor/stromal cellsGSE123813
SC0006Yost KE.Nat Med(2019)squamous cell carcinomaSCCImmune Checkpoint Therapytreatment/non-treatment4/411494/14523tumor-infiltrating T cells;CD45+ CD3- tumor-infiltrating lymphocytes;CD45- CD3- tumor/stromal cellsGSE123813
SC0007Da Via MC.Nat Med(2021)multiple myelomaSKCMAdoptive Cell Therapytreatment/non-treatment1/15876/2146Bone marrow aspirateGSE143317
SC0008Yuen KC.Nat Med(2020)bladder cancerBLCAImmune Checkpoint Therapyresponse/non-response5/515372/11378PBMCGSE145281
SC0009Oh DY.Cell(2020)Bladder CancerBLCAImmune Checkpoint Therapytreatment/non-treatment7/613048/6796Bladder Tissue CD4+GSE149652
SC0010Oh DY.Cell(2020)Bladder CancerBLCAImmune Checkpoint Therapytreatment/non-treatment4/54104/6658Bladder Tissue CD8+GSE149652
SC0011Rabilloud T. Nat Commun(2021)B-cell acute lymphoblastic leukemiaALLAdoptive Cell Therapytreatment/non-treatment2/21206/1713Bone marrow from B-ALL patientGSE153697
SC0012Pauken KE.J Exp Med (2021)metastatic melanomaSKCMImmune Checkpoint Therapytreatment/non-treatment2/437605/21335Peripheral bloodGSE159251
SC0013Samur MK.Nat Commun(2021)multiple myelomaMMAdoptive Cell Therapyresponse/non-response;treatment/non-treatment5/3;7/129322/17586;42040/4868Bone MarrowGSE164551