| Adenoma |
Hepatocellular Adenoma |
GSE43091 |
HM450k |
Genome-scale methylome profiling of hepatocellular adenomas |
24735922 |
 |
 |
 |
|
| Bacterial Infectious Disease |
Neonatal Sepsis |
GSE58651 |
HM450k |
Epigenome Wide Association Study unveils differential methylation of Leukocyte cell adhesion molecules in neonatal sepsis |
|
|
|
|
|
| Chromosomal Disease |
Down Syndrome |
GSE50586 |
HM450k |
Distinct DNA methylation patterns of cognitive impairment and Trisomy 21 in Down Syndrome |
24373378 |
|
|
|
|
| Chromosomal Disease |
Down Syndrome |
GSE52588 |
HM450k |
Identification of a DNA methylation signature in blood from subjects affected by Down syndrome |
25701644
25678027 |
|
|
|
|
| Chromosomal Disease |
Down Syndrome |
GSE63347 |
HM450k |
DNA methylation profiles of brain samples from Down Syndrome subjects and controls |
25678027 |
|
|
|
|
| Chromosomal Disease |
Silver Russell Syndrome |
GSE55491 |
HM450k |
Genomewide methylation analysis in Silver Russell syndrome patients |
25563730 |
|
|
|
|
| Chromosomal Disease |
Trisomy |
GSE66210 |
HM450k |
Epigenome analysis of first trimester CVS samples from normal and Trisomy 13,18,21 pregnancies, and maternal whole blood samples |
|
|
|
|
|
| Cognitive Disorder |
Schizophrenia |
GSE61107 |
HM450k |
Genome-wide DNA methylation analysis of human brain tissue from schizophrenia patients |
24399042 |
|
|
|
|
| Cognitive Disorder |
Bipolar disorder and iron deficiency (adipose tissue) |
ENCODE |
WGBS |
|
|
|
|
|
|
| Cognitive Disorder |
Bipolar disorder and iron deficiency (esophagus) |
ENCODE |
WGBS |
|
|
|
|
|
|
| Cognitive Disorder |
Bipolar disorder and iron deficiency (lung) |
ENCODE |
WGBS |
|
|
|
|
|
|
| Cognitive Disorder |
Bipolar disorder and iron deficiency (psoas muscle) |
ENCODE |
WGBS |
|
|
|
|
|
|
| Cognitive Disorder |
Bipolar disorder and iron deficiency (small intestine) |
ENCODE |
WGBS |
|
|
|
|
|
|
| Cognitive Disorder |
Bipolar disorder and iron deficiency (spleen) |
ENCODE |
WGBS |
|
|
|
|
|
|
| Cognitive Disorder |
Bipolar disorder and iron deficiency (stomach) |
ENCODE |
WGBS |
|
|
|
|
|
|
| Endocrine Gland Cancer |
Pancreatic Adenocarcinoma |
TCGA |
HM450k |
|
|
|
|
|
|
| Endocrine Gland Cancer |
Pancreatic Ductal Adenocarcinoma |
GSE49149 |
HM450k |
Genome-wide DNA methylation patterns in pancreatic ductal adenocarcinoma (PDAC) |
24500968 |
|
|
|
|
| Endocrine Gland Cancer |
Paraganglioma |
GSE43293 |
HM450k |
Genome-scale methylome profiling of pheochromocytomas and paragangliomas with Illumina HumanMethylation450 arrays |
23707781 |
|
|
|
|
| Endocrine Gland Cancer |
Pheochromocytoma and Paraganglioma |
TCGA |
HM450k |
|
|
|
|
|
|
| Endocrine Gland Cancer |
Thyroid Carcinoma |
TCGA |
HM450k |
|
|
|
|
|
|
| Gastrointestinal System Cancer |
Cholangiocarcinoma |
GSE49656 |
HM450k |
Distinct Mutational Patterns of Infection and Non-Infection-Related Bile Duct Cancers Revealed by Exome Sequencing |
24185513 |
|
|
|
|
| Gastrointestinal System Cancer |
Cholangiocarcinoma |
TCGA |
HM450k |
|
|
|
|
|
|
| Gastrointestinal System Cancer |
Colon Adenocarcinoma |
TCGA |
HM450k |
|
|
|
|
|
|
| Gastrointestinal System Cancer |
Colon Adenocarcinoma |
TCGA |
WGBS |
|
|
|
|
|
|
| Gastrointestinal System Cancer |
Colon Adenocarcinoma |
GSE42752 |
HM450k |
Epigenetic analysis of normal colon epithelium and colon adenocarcinoma |
23867710 |
|
|
|
|
| Gastrointestinal System Cancer |
Colon Adenoma |
GSE48684 |
HM450k |
Global DNA methylation alterations reveal multiple pathways in the initiation and progression of colorectal cancer |
24793120 |
|
|
|
|
| Gastrointestinal System Cancer |
Colorectal Cancer |
GSE48684 |
HM450k |
Global DNA methylation alterations reveal multiple pathways in the initiation and progression of colorectal cancer |
24793120 |
|
|
|
|
| Gastrointestinal System Cancer |
Colorectal Cancer |
GSE68060 |
HM450k |
Methyome profiling in serrated carcinoma |
|
|
|
|
|
| Gastrointestinal System Cancer |
Esophageal Carcinoma |
TCGA |
HM450k |
|
|
|
|
|
|
| Gastrointestinal System Cancer |
Esophageal Squamous Cell Carcinoma |
GSE52826 |
HM450k |
the whole-genome methylation profile of esophageal squamous cell carcinoma |
25050929 |
|
|
|
|
| Gastrointestinal System Cancer |
Gastrointestinal Stromal Tumor |
GSE34387 |
HM450k |
Oncogenic SDH mutation underlies global epigenomic instability in gastrointestinal stromal tumor |
23550148 |
|
|
|
|
| Gastrointestinal System Cancer |
Hepatocellular Carcinoma |
GSE67477 |
HM450k |
Global DNA methylation landscape reveals roles of DNA methylation involved in the regulation of drug metabolizing enzyme [II] |
|
|
|
|
|
| Gastrointestinal System Cancer |
Hepatocellular Carcinoma |
ENCODE |
WGBS |
|
|
|
|
|
|
| Gastrointestinal System Cancer |
Liver Hepatocellular Carcinoma |
TCGA |
HM450k |
|
|
|
|
|
|
| Gastrointestinal System Cancer |
Oral Cavity Squamous Cell Carcinoma |
GSE41114 |
HM450k |
Integrative genomic characterization of oral squamous cell carcinoma identifies frequent somatic drivers (methylation) |
23619168 |
|
|
|
|
| Gastrointestinal System Cancer |
Rectum Adenocarcinoma |
TCGA |
HM450k |
|
|
|
|
|
|
| Gastrointestinal System Cancer |
Rectum Adenocarcinoma |
TCGA |
WGBS |
|
|
|
|
|
|
| Gastrointestinal System Cancer |
Small Bowel Adenocarcinoma |
GSE61467 |
HM450k |
DNA methylation screening of small bowel adenocarcinoma |
26315110 |
|
|
|
|
| Gastrointestinal System Cancer |
Stomach Adenocarcinoma |
TCGA |
HM450k |
|
|
|
|
|
|
| Gastrointestinal System Cancer |
Stomach Adenocarcinoma |
TCGA |
WGBS |
|
|
|
|
|
|
| Gastrointestinal System Disease |
Periodontitis |
GSE59932 |
HM450k |
DNA methylation data from 12 normal and 10 chronic periodontitis patients from site OCI |
|
|
|
|
|
| Gastrointestinal System Disease |
Ulcerative Colitis |
GSE32146 |
HM450k |
DNA methylation in a discovery cohort of colon mucosa samples from individuals with Crohns' disease or ulcerative colitis and normal controls |
|
|
|
|
|
| Head and Neck Cancer |
Head and Neck Squamous Cell Carcinoma |
GSE40005 |
HM450k |
Genome-wide methylation profile of head and neck squamous cell carcioma (HNSCC) |
|
|
|
|
|
| Head and Neck Cancer |
Head and Neck Squamous Cell Carcinoma |
TCGA |
HM450k |
|
|
|
|
|
|
| Immune System Cancer |
Acute Lymphoblastic Leukemia |
GSE39141 |
HM450k |
Genome-wide DNA methylation profiling predicts relapse in childhood B-cell acute lymphoblastic leukemia |
23110451 |
|
|
|
|
| Immune System Cancer |
Acute Lymphoblastic Leukemia |
GSE56068 |
HM450k |
Immortalization of T-cells is accompanied by gradual changes in CpG methylation resulting in a profile resembling a subset of T-cell leukemias [methylation] |
25065939 |
|
|
|
|
| Immune System Cancer |
Acute Lymphoblastic Leukemia |
GSE67042 |
HM450k |
NALP3 inflammasome up-regulation and CASP1 cleavage of the glucocorticoid receptor causes glucocorticoid resistance in leukemia cells [HumanMethylation450 Germline] |
25938942 |
|
|
|
|
| Immune System Cancer |
Acute Lymphoblastic Leukemia |
GSE49031 |
HM450k |
Genome-wide signatures of differential DNA methylation in pediatric acute lymphoblastic leukemia |
24063430 |
|
|
|
|
| Immune System Cancer |
Acute Myeloid Leukemia |
GSE58477 |
HM450k |
Differential methylation in CN-AML preferentially targets non-CGI regions and is dictated by DNMT3A mutational status and associated with predominant hypomethylation of HOX genes |
24866170 |
|
|
|
|
| Immune System Cancer |
Acute Myeloid Leukemia |
GSE62929 |
HM450k |
Mutant WT1 is Associated with DNA Hypermethylation of PRC2 Targets in AML and Responds to EZH2 Inhibition |
25398938 |
|
|
|
|
| Immune System Cancer |
Acute Myeloid Leukemia |
GSE63409 |
HM450k |
Epigenome analysis of leukemia stem, blast and normal hematopoietic stem/progenitor cells |
26444494 |
|
|
|
|
| Immune System Cancer |
Acute Myeloid Leukemia |
GSE64934 |
HM450k |
Chronic growth factor signaling in Acute Myeloid Leukemia is connected to a specific chromatin signature [Methylation] |
|
|
|
|
|
| Immune System Cancer |
Acute Promyelocytic Leukemia |
GSE42118 |
HM450k |
DNA methylation changes are a late event in Acute Promyelocytic Leukemia and coincide with loss of transcription factor binding (Illumina Methylation) |
23152544 |
|
|
|
|
| Immune System Cancer |
Leukemia |
GSE20945 |
HM450k |
Effects of DAC treatment |
22439938 |
|
|
|
|
| Immune System Cancer |
Lymphoma |
GSE66881 |
HM450k |
ALK-dependent transcription factor networks are associated with epigenomic alterations of DNA methylation in ALCL |
|
|
|
|
|
| Immune System Cancer |
Myelodysplastic Syndrome |
GSE51758 |
HM450k |
Genome-wide profiling of DNA methylation and expression identifies CIMP in myelodysplastic syndrome [Illumina] |
|
|
|
|
|
| Immune System Cancer |
Thymoma |
TCGA |
HM450k |
|
|
|
|
|
|
| Immune System Disease |
Food Allergy |
GSE34639 |
HM450k |
Methylation data from CD4+ cells at birth and 12 months from a cohort of children who were diagnosed with IgE food allergy to either egg milk or peanut at 12 months (n=12) and healthy controls (n=12) |
22495533
24762976 |
|
|
|
|
| In Situ Carcinoma |
Ductal carcinoma in Situ |
GSE66313 |
HM450k |
DNA methylation in ductal carcinoma in situ related with future development of invasive breast cancer |
|
|
|
|
|
| Integumentary System Cancer |
Skin Cutaneous Melanoma |
TCGA |
HM450k |
|
|
|
|
|
|
| Skin Disease |
Keloid |
GSE56420 |
HM450k |
Genome-wide Scan for Methylation Profiles in Keloids |
24391521 |
|
|
|
|
| Syndrome |
Psoriasis |
GSE63315 |
HM450k |
Narrow-band UVB phototherapy reverses DNA methylation changes in psoriatic epidermis |
25830654 |
|
|
|
|
| Malignant Glioma |
Glioblastoma Multiforme |
TCGA |
HM450k |
|
|
|
|
|
|
| Malignant Glioma |
Oligodendroglial Tumor |
GSE61160 |
HM450k |
Codeletion of 1p and 19q Determines Distinct Gene Methylation and Expression Profiles in IDH-mutated Oligodendroglial Tumors |
23689617 |
|
|
|
|
| Malignant Glioma |
Pilocytic Astrocytoma |
GSE44684 |
HM450k |
DNA methylation data from pilocytic astrocytoma tumor samples and normal cerebellum controls |
23660940 |
|
|
|
|
| Malignant Glioma |
Primary Glioblastoma |
GSE36278 |
HM450k |
Methylation data from glioblastoma tumor samples |
23079654 |
|
|
|
|
| Melanoma |
Melanoma |
GSE44661 |
HM450k |
DNA methylation analysis of melanoma progression to brain metastasis |
24014427 |
|
|
|
|
| Melanoma |
Melanoma |
GSE54939 |
HM450k |
Leukocytes methylome of melanoma patients with and without CDKN2A mutations |
25236571 |
|
|
|
|
| Monogenic Disease |
Progeria Syndrome |
GSE42865 |
HM450k |
Genome-wide DNA methylation profiling of Progeria and Werner syndrome patients |
23257959 |
|
|
|
|
| Monogenic Disease |
Werner Syndrome |
GSE42865 |
HM450k |
Genome-wide DNA methylation profiling of Progeria and Werner syndrome patients |
23257959 |
|
|
|
|
| Nervous System Cancer |
Medulloblastoma Tumor |
GSE54880 |
HM450k |
Microarray-based DNA methylation profiling of medulloblastoma and normal cerebellum samples |
23670100
24847876 |
|
|
|
|
| Nutrition Disease |
Post Obese |
GSE58622 |
HM450k |
The fat cell epigenetic signature in post-obese women is characterized by global hypomethylation and differential DNA methylation of adipogenesis genes |
25783037 |
|
|
|
|
| Peroxisomal Disease |
Zellweger Spectrum Disorder |
GSE68134 |
HM450k |
DNA methylation profiles of fibroblasts and induced pluripotent stem cells (iPSCs) from individuals with Zellweger spectrum disorder (ZSD), a class of peroxisome biogenesis disorder, and healthy controls |
|
|
|
|
|
| Reproductive Organ Cancer |
Cervical Cancer |
GSE46306 |
HM450k |
Genome-wide DNA methylation in cervical tissue |
24030264 |
|
|
|
|
| Reproductive Organ Cancer |
Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma |
TCGA |
HM450k |
|
|
|
|
|
|
| Reproductive Organ Cancer |
Ovarian Cancer |
GSE51820 |
HM450k |
DNA methylation profiles of primary ovarian cancers |
|
|
|
|
|
| Reproductive Organ Cancer |
Prostate Adenocarcinoma |
GSE74013 |
HM450k |
Epigenetic analysis of normal prostate tissue and prostate adenocarcinoma |
|
|
|
|
|
| Reproductive Organ Cancer |
Prostate Adenocarcinoma |
TCGA |
HM450k |
|
|
|
|
|
|
| Reproductive Organ Cancer |
Prostate Cancer |
GSE38240 |
HM450k |
DNA methylation profiling of normal prostates and prostate cancer metastases [Illumina] |
23345608 |
|
|
|
|
| Reproductive Organ Cancer |
Prostate Cancer |
GSE62053 |
HM450k |
S-adenosylmethionine (SAM) changes DNA methylation patterns in prostate cancer cells |
23345608 |
|
|
|
|
| Reproductive Organ Cancer |
Prostate Carcinoma |
GSE34340 |
HM450k |
Bisulphite sequencing of native LNCaP and PrEC DNA [methylation array] |
22466171 |
|
|
|
|
| Reproductive Organ Cancer |
Uterine Corpus Endometrial Carcinoma |
TCGA |
HM450k |
|
|
|
|
|
|
| Reproductive Organ Cancer |
Uterine Corpus Endometrial Carcinoma |
TCGA |
WGBS |
|
|
|
|
|
|
| Reproductive Organ Cancer |
Uterine Leiomyoma |
GSE45187 |
HM450k |
Epigenome analysis of uterin leiomyoma and myometrium with or without leiomyoma [Methylation data] |
23818951 |
|
|
|
|
| Respiratory System Cancer |
Lung Adenocarcinoma |
TCGA |
HM450k |
|
|
|
|
|
|
| Respiratory System Cancer |
Lung Adenocarcinoma |
TCGA |
WGBS |
|
|
|
|
|
|
| Respiratory System Cancer |
Lung Squamous Cell Carcinoma |
TCGA |
HM450k |
|
|
|
|
|
|
| Respiratory System Cancer |
Lung Squamous Cell Carcinoma |
TCGA |
WGBS |
|
|
|
|
|
|
| Respiratory System Cancer |
Non-small Cell Lung Cancer |
GSE36216 |
HM450k |
DNA Methylation Profiling Defines Clinically Relevant Biological Subsets of Non-small Cell Lung Cancer |
22261801 |
|
|
|
|
| Respiratory System Disease |
Seasonal Allergic Rhinitis |
GSE50222 |
HM450k |
DNA Methylation Changes in Allergic Patients Correlate with Symptom Severity [methylation] |
24391521 |
|
|
|
|
| Sarcoma |
Sarcoma |
TCGA |
HM450k |
|
|
|
|
|
|
| Thoracic Cancer |
Breast Cancer |
GSE59901 |
HM450k |
DNA methylation study in breast cancer [methylation] |
|
|
|
|
|
| Thoracic Cancer |
Breast Cancer |
GSE60185 |
HM450k |
Genome-wide DNA methylation profiles in progression to in situ and invasive carcinoma of the breast with impact on gene transcription and prognosis |
25146004
21364938 |
|
|
|
|
| Thoracic Cancer |
Breast Cancer |
GSE66695 |
HM450k |
Genome-wide Scan for Methylation Profiles in Breast Cancer |
|
|
|
|
|
| Thoracic Cancer |
Breast Invasive Carcinoma |
TCGA |
HM450k |
|
|
|
|
|
|
| Thoracic Cancer |
Breast Invasive Carcinoma |
TCGA |
WGBS |
|
|
|
|
|
|
| Urinary System Cancer |
Bladder Cancer |
GSE69463 |
HM450k |
Epigenome analysis of angiogenin impact on bladder cancer |
|
|
|
|
|
| Urinary System Cancer |
Bladder Urothelial Carcinoma |
TCGA |
HM450k |
|
|
|
|
|
|
| Urinary System Cancer |
Bladder Urothelial Carcinoma |
TCGA |
WGBS |
|
|
|
|
|
|
| Urinary System Cancer |
Kidney Renal Clear Cell Carcinoma |
GSE61441 |
HM450k |
Epigenome analysis of clear cell renal cell carcinoma (ccRCC) tissue versus matched normal kidney tissue |
|
|
|
|
|
| Urinary System Cancer |
Kidney Renal Clear Cell Carcinoma |
TCGA |
HM450k |
|
|
|
|
|
|
| Urinary System Cancer |
Kidney Renal Papillary Cell Carcinoma |
TCGA |
HM450k |
|
|
|
|
|
|
| Urinary System Cancer |
Wilms Tumour |
GSE59157 |
HM450k |
Methylome analysis of normal kidney, nephrogenic rest and Wilms tumor |
25134821 |
|
|
|
|
| viral Infectious Disease |
HIV |
GSE59457 |
HM450k |
DNA methylation levels of various brain regions from HIV+ and HIV- subjects |
25969563 |
|
|
|
|
| Viral Infectious Disease |
HIV |
GSE67748 |
HM450k |
Cerebellum Illumina Inf 450 DNA methylation samples from HIV+ and HIV- human subjects |
25969563 |
|
|
|
|
| Viral Infectious Disease |
HIV |
GSE67749 |
HM450k |
Frontal lobe (brain) Illumina Inf 450 DNA methylation samples from HIV+ and HIV- human subjects |
25969563 |
|
|
|
|
| Viral Infectious Disease |
HIV-associated Lymphoma |
GSE42372 |
HM450k |
Methylation profiling classifies HIV-associated lymphoma |
24335480 |
|
|
|
|